View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13716_low_2 (Length: 956)

Name: NF13716_low_2
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13716_low_2
NF13716_low_2
[»] chr7 (51 HSPs)
chr7 (18-684)||(38166590-38167257)
chr7 (72-443)||(38157933-38158296)
chr7 (61-441)||(38188068-38188443)
chr7 (273-443)||(38150194-38150358)
chr7 (52-212)||(38150750-38150910)
chr7 (126-540)||(42796290-42796699)
chr7 (302-540)||(36745007-36745251)
chr7 (371-684)||(37883351-37883668)
chr7 (147-534)||(34145890-34146272)
chr7 (147-534)||(34181163-34181545)
chr7 (351-534)||(33860159-33860342)
chr7 (147-449)||(45585158-45585439)
chr7 (147-441)||(35073543-35073832)
chr7 (142-441)||(35084594-35084888)
chr7 (352-540)||(43027207-43027399)
chr7 (695-801)||(13311869-13311975)
chr7 (136-441)||(35099895-35100195)
chr7 (854-947)||(36449284-36449376)
chr7 (61-138)||(38597840-38597917)
chr7 (695-804)||(11379070-11379178)
chr7 (148-263)||(38173572-38173687)
chr7 (806-903)||(9107304-9107401)
chr7 (695-804)||(22568053-22568163)
chr7 (351-441)||(35083622-35083712)
chr7 (695-750)||(12480916-12480971)
chr7 (842-940)||(23983400-23983499)
chr7 (150-269)||(38286614-38286733)
chr7 (695-920)||(9427926-9428156)
chr7 (147-269)||(35083786-35083908)
chr7 (178-263)||(33859991-33860076)
chr7 (355-443)||(38286460-38286548)
chr7 (851-917)||(40292856-40292923)
chr7 (695-804)||(6716679-6716787)
chr7 (695-748)||(37795019-37795072)
chr7 (563-684)||(42796716-42796837)
chr7 (695-751)||(8745183-8745239)
chr7 (693-804)||(24324739-24324851)
chr7 (147-227)||(36745318-36745398)
chr7 (695-750)||(46133273-46133329)
chr7 (806-912)||(12546239-12546345)
chr7 (695-761)||(3478382-3478448)
chr7 (695-749)||(3867146-3867200)
chr7 (695-749)||(6584939-6584993)
chr7 (851-913)||(9349911-9349972)
chr7 (885-947)||(22567909-22567970)
chr7 (695-749)||(34389992-34390046)
chr7 (695-748)||(3419654-3419707)
chr7 (695-748)||(9349779-9349832)
chr7 (695-748)||(10244212-10244265)
chr7 (635-684)||(38157689-38157738)
chr7 (695-748)||(38306291-38306344)
[»] chr6 (21 HSPs)
chr6 (695-947)||(15944049-15944299)
chr6 (354-684)||(4164182-4164515)
chr6 (354-684)||(4225803-4226136)
chr6 (351-534)||(25568735-25568918)
chr6 (351-534)||(26002603-26002786)
chr6 (351-534)||(25563120-25563303)
chr6 (351-534)||(26102632-26102815)
chr6 (695-804)||(26215961-26216070)
chr6 (178-269)||(25562950-25563041)
chr6 (178-269)||(26102462-26102553)
chr6 (178-263)||(25568567-25568652)
chr6 (695-774)||(21266143-21266222)
chr6 (149-227)||(26002406-26002484)
chr6 (695-804)||(26534657-26534770)
chr6 (695-943)||(33968417-33968664)
chr6 (695-749)||(9224071-9224125)
chr6 (695-804)||(20701745-20701854)
chr6 (695-763)||(21265016-21265084)
chr6 (884-940)||(32935129-32935185)
chr6 (695-748)||(3117523-3117576)
chr6 (871-904)||(34101393-34101426)
[»] chr2 (31 HSPs)
chr2 (696-947)||(4471954-4472206)
chr2 (695-824)||(2062919-2063048)
chr2 (695-947)||(22884931-22885184)
chr2 (695-916)||(33788459-33788683)
chr2 (302-404)||(12409971-12410073)
chr2 (302-404)||(12422031-12422133)
chr2 (695-916)||(27740005-27740229)
chr2 (696-804)||(18681096-18681204)
chr2 (695-777)||(16960012-16960094)
chr2 (695-804)||(15126352-15126461)
chr2 (842-920)||(20572267-20572345)
chr2 (694-804)||(27880073-27880181)
chr2 (695-878)||(25504773-25504960)
chr2 (695-804)||(34230231-34230340)
chr2 (871-947)||(27879932-27880008)
chr2 (695-804)||(3745364-3745474)
chr2 (695-749)||(14405228-14405282)
chr2 (695-788)||(16952340-16952434)
chr2 (695-788)||(17023005-17023099)
chr2 (695-788)||(17060311-17060405)
chr2 (695-748)||(39338863-39338916)
chr2 (695-751)||(1269513-1269569)
chr2 (894-941)||(29139738-29139785)
chr2 (837-947)||(43816254-43816363)
chr2 (695-749)||(7874321-7874375)
chr2 (184-269)||(12410918-12411004)
chr2 (184-269)||(12422978-12423064)
chr2 (695-777)||(31902383-31902465)
chr2 (860-905)||(2063070-2063115)
chr2 (556-684)||(12409676-12409807)
chr2 (556-684)||(12421736-12421867)
[»] chr4 (11 HSPs)
chr4 (695-947)||(12296205-12296460)
chr4 (695-768)||(46698762-46698836)
chr4 (695-916)||(28966897-28967121)
chr4 (695-804)||(35800519-35800628)
chr4 (695-751)||(25753202-25753258)
chr4 (695-804)||(53823363-53823472)
chr4 (695-750)||(16501761-16501816)
chr4 (695-804)||(38637175-38637283)
chr4 (695-804)||(38929857-38929966)
chr4 (695-751)||(22811155-22811211)
chr4 (695-804)||(41117909-41118018)
[»] chr8 (14 HSPs)
chr8 (696-954)||(15906717-15906978)
chr8 (695-750)||(30236124-30236179)
chr8 (695-804)||(17656944-17657053)
chr8 (695-804)||(17720648-17720756)
chr8 (695-750)||(32945699-32945754)
chr8 (694-777)||(35062486-35062569)
chr8 (695-748)||(9519529-9519582)
chr8 (695-748)||(24995393-24995446)
chr8 (695-748)||(41893399-41893451)
chr8 (695-753)||(10552298-10552356)
chr8 (695-804)||(10248495-10248604)
chr8 (695-748)||(16457459-16457512)
chr8 (695-748)||(37986856-37986909)
chr8 (696-749)||(38577787-38577840)
[»] scaffold0176 (1 HSPs)
scaffold0176 (147-517)||(23725-24090)
[»] chr5 (16 HSPs)
chr5 (695-945)||(39183985-39184238)
chr5 (126-269)||(9663321-9663464)
chr5 (695-804)||(13954176-13954285)
chr5 (351-441)||(9663538-9663628)
chr5 (694-748)||(22675322-22675376)
chr5 (695-822)||(27713099-27713228)
chr5 (695-878)||(8730947-8731134)
chr5 (837-937)||(17853861-17853961)
chr5 (695-916)||(24072094-24072317)
chr5 (695-751)||(8297498-8297554)
chr5 (695-744)||(39024452-39024501)
chr5 (695-749)||(7195236-7195290)
chr5 (842-943)||(23426512-23426613)
chr5 (851-905)||(31742368-31742421)
chr5 (695-788)||(14302388-14302481)
chr5 (695-748)||(34378128-34378181)
[»] chr3 (19 HSPs)
chr3 (695-788)||(5556600-5556694)
chr3 (695-786)||(1652846-1652937)
chr3 (699-788)||(27398992-27399082)
chr3 (695-803)||(33143891-33144000)
chr3 (695-804)||(823376-823486)
chr3 (355-425)||(2223878-2223948)
chr3 (836-940)||(13018113-13018217)
chr3 (837-947)||(27399136-27399246)
chr3 (150-269)||(2224014-2224133)
chr3 (695-749)||(9584050-9584104)
chr3 (695-749)||(19176532-19176586)
chr3 (695-749)||(39021273-39021327)
chr3 (695-749)||(47945736-47945790)
chr3 (695-748)||(17550987-17551040)
chr3 (695-751)||(37123412-37123468)
chr3 (708-777)||(38488838-38488908)
chr3 (695-749)||(43012405-43012459)
chr3 (884-917)||(823245-823278)
chr3 (695-748)||(20611813-20611866)
[»] chr1 (18 HSPs)
chr1 (695-904)||(50589046-50589258)
chr1 (695-804)||(27102221-27102330)
chr1 (806-947)||(49820276-49820416)
chr1 (852-947)||(16577465-16577561)
chr1 (695-826)||(42374193-42374327)
chr1 (695-748)||(5389419-5389472)
chr1 (693-751)||(10785454-10785512)
chr1 (695-804)||(4651810-4651918)
chr1 (695-804)||(19598666-19598775)
chr1 (695-748)||(31585758-31585811)
chr1 (695-748)||(46692817-46692870)
chr1 (695-750)||(17033616-17033672)
chr1 (836-903)||(38544578-38544646)
chr1 (852-947)||(38548856-38548950)
chr1 (692-750)||(16147582-16147640)
chr1 (695-748)||(24658959-24659012)
chr1 (695-728)||(38544756-38544789)
chr1 (695-748)||(41920482-41920535)
[»] scaffold0200 (1 HSPs)
scaffold0200 (695-751)||(19413-19469)
[»] scaffold1613 (2 HSPs)
scaffold1613 (836-903)||(857-925)
scaffold1613 (695-728)||(1035-1068)
[»] scaffold0119 (1 HSPs)
scaffold0119 (695-751)||(42133-42189)


Alignment Details
Target: chr7 (Bit Score: 602; Significance: 0; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Complemental strand, 38167257 - 38166590
Alignment:
Q  18 ttaccatcatgaaattaatacaattaat------tagttttttgattgattatgcttttaatttaattataattctggtgtgtgttcattactaattgca 111  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38167257 ttaccatcatgaaattaatacaattaatcaattatagttttttgattgattatgcttttaatttaattataattctggtgtgtgttcattactaattgca 38167158  T
Q  112 gtagcaatgaagaggaggtctaaaaagcccaagattgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38167157 gtagcaatgaagaggaggtctaaaaagcccaagattgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaggatttggtgaaaa 38167058  T
Q  212 ccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataataca 311  Q
    ||| |||||||||||||||| |||||||||||||| ||||||| ||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  38167057 ccagtgcattgtccaagcggtggcttcaggaatggagattaaggatggacctaaactt-----tgatctccaaaacatgtttgaacttcgctataataca 38166963  T
Q  312 gttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatga 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  38166962 gttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgccaaaagattggatcaattcatgctgcattatcaagatgatatga 38166863  T
Q  412 ttagttcaatccgagtaaattttccattaggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattga 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38166862 ttagttcaatccgagtaaattttccattaggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattga 38166763  T
Q  512 acttctattgtcatatgaaacaaacgatagggattttgttgtggaaatagagccatacaaattttccatgactctcttatctcacactgattctctgacg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38166762 acttctattgtcatatgaaacaaacgatagggattttgttgtggaaatagagccatacaaattttccatgactctcttatctcacactgattctctgacg 38166663  T
Q  612 aatttgcatttacagaagtgctgcctagtagcacctatggacttctctggtttgaagaatttaagaacacttg 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38166662 aatttgcatttacagaagtgctgcctagtagcacctatggacttctctggtttgaagaatttaagaacacttg 38166590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 72 - 443
Target Start/End: Complemental strand, 38158296 - 38157933
Alignment:
Q  72 atttaattataattctggtgtgtgttcattactaattgcagtagcaatgaagagga---ggtctaaaaagcccaagattgagttgcctgattgtatttta 168  Q
    ||||||||  ||||||| ||| || || ||| ||||||||||||||||||||||||   |||||||||||||||||||||  ||||||||||||||||||    
T  38158296 atttaatttaaattctgctgtttgctcgttattaattgcagtagcaatgaagaggaagaggtctaaaaagcccaagattgcattgcctgattgtatttta 38158197  T
Q  169 tcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatggacctaaact 268  Q
    || | |||||||||||||||||||||||| |||||||| ||||| |   || | || || |   ||  ||| ||||||  |||||||||||||||         
T  38158196 tcaaatatattttcaaagttaggtttgaaggatttggtaaaaacaagcacactttcaaaacattggtgtcatgaatgggcattaagaatggacct----- 38158102  T
Q  269 taactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgcc 368  Q
    ||||||||||||||| |||||||||||      || |||||||||||||||||||||  |||| ||||| ||||||||||||||||||||||||||||||    
T  38158101 taactttgatctccataacatgtttga------ctctaatacagttcaagagttaccacaaagtcttccgctccttcaagggtttcaatctgaatttgcc 38158008  T
Q  369 aaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggt 443  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||||||    
T  38158007 aaaagattggatcaattcatgctgcattttcaaggcgacatgattagttcaatccgactaagttttccattaggt 38157933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 61 - 441
Target Start/End: Complemental strand, 38188443 - 38188068
Alignment:
Q  61 ttatgcttttaatttaattataattctggtgtgtgttcattactaattgcagtagcaatgaagaggaggtctaaaaagcccaagattgagttgcctgatt 160  Q
    ||||| ||||||| |||||  ||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||||    
T  38188443 ttatggttttaatataattcaaattctggtgtgtgttcgttattaatcgcagtaacaatgaagaggaggtctaaaaagtccaagattgagttgccagatt 38188344  T
Q  161 gtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatgga 260  Q
     ||||||||| |||||||| || |||||||||||||| |||||||||||||| |   || ||||||| |   ||| ||| ||||   ||||||||||       
T  38188343 ctattttatctattatattctcgaagttaggtttgaaggatttggtgaaaacaagcacactgtccaaacaatggcgtcatgaattaggattaagaat--- 38188247  T
Q  261 cctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttcaagggtttcaatctg 360  Q
      | | || || ||||||||||| ||||||||| | |||   ||||||||| ||||||||| ||  ||||||||||||||  || |||||||||||||||    
T  38188246 --tgatctcaattttgatctccataacatgtttaatcttgaatataatacaattcaagagtcacacaaaagccttccactatttaaagggtttcaatctg 38188149  T
Q  361 aatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattag 441  Q
    |||||| || ||||||||||||||||||||| |||| |||||||| ||| ||  ||||| | |||||||||||||||||||    
T  38188148 aatttgtcacaagattggatcaattcatgctacattatcaaggtgctatcatccgttcagttcgagtaaattttccattag 38188068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 273 - 443
Target Start/End: Complemental strand, 38150358 - 38150194
Alignment:
Q  273 tttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgccaaaa 372  Q
    ||||||||||| |||||||||||      || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38150358 tttgatctccataacatgtttga------ctctaatacagttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgccaaaa 38150265  T
Q  373 gattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggt 443  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38150264 gattggatcaattcatgctgcattatcaagatgatatgattagttcaatccgagtaaattttccattaggt 38150194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 52 - 212
Target Start/End: Complemental strand, 38150910 - 38150750
Alignment:
Q  52 tttgattgattatgcttttaatttaattataattctggtgtgtgttcattactaattgcagtagcaatgaagaggaggtctaaaaagcccaagattgagt 151  Q
    |||||||| ||||| |||   |||||||  ||||||||||| |  || ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38150910 tttgattgtttatgttttagttttaatttaaattctggtgtttactcgttattaattgcagtagcaatgaagaggaggtctaaaaagcccaagattgagt 38150811  T
Q  152 tgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaac 212  Q
    |||||||||| |||||||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  38150810 tgcctgattgcattttatcgaatatcttttcaaggttaggtttgaaggatttggtgaaaac 38150750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 126 - 540
Target Start/End: Original strand, 42796290 - 42796699
Alignment:
Q  126 gaggtctaaaaagcccaagattgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtcc 225  Q
    ||||| || ||||| | ||| ||||||||||||||||||| ||||   ||| ||||| ||||| |||||||| |||||||||||||| |  |||||||||    
T  42796290 gaggtgtacaaagctcgagagtgagttgcctgattgtattatatcttatatcttttccaagtttggtttgaaggatttggtgaaaacaagcgcattgtcc 42796389  T
Q  226 aagcggcggcttcaggaatggcgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttacc 325  Q
    || ||  || |||| |||||| ||||||| | |||||| |||||     |||||| || | |||||||||      |||||| ||| ||||||| |||||    
T  42796390 aaacgatggattcacgaatggggattaaggacggacctcaactt-----tgatcttcataccatgtttga------ctataacacaattcaagacttacc 42796478  T
Q  326 gaaaagccttccactccttcaagggtttca------atctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttca 419  Q
     || |  ||||||||| ||||| | |||||      |||| ||||||||| ||||||||||||||| ||||| |||| | |||||| ||| ||  |||||    
T  42796479 aaacacacttccactctttcaaagatttcactttcaatctcaatttgccacaagattggatcaatttatgctccattataaaggtgctatcatccgttca 42796578  T
Q  420 atccgagtaaattttccattaggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctat 519  Q
    |||||||||||||||||||||||  ||||| ||||    | ||||| ||||||||| ||| ||||||| |||||||| | ||||  |||||||||||| |    
T  42796579 atccgagtaaattttccattaggcaatgaacatagggatgccattgatagattgatctccaaaggaattgctaagggtgtcaaacatattgaacttctct 42796678  T
Q  520 tgtcatatgaaacaaacgata 540  Q
    |||||| ||||||||| ||||    
T  42796679 tgtcatctgaaacaaatgata 42796699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 302 - 540
Target Start/End: Complemental strand, 36745251 - 36745007
Alignment:
Q  302 ctataatacagttcaagagttaccgaaaagccttccactccttcaagggtttca------atctgaatttgccaaaagattggatcaattcatgctgcat 395  Q
    |||||| ||| ||||||| ||||| ||||||||||||||| ||||| |||||||      ||||||||||||||  ||||||||||||||  |||| |||    
T  36745251 ctataacacaattcaagacttaccaaaaagccttccactctttcaaaggtttcactttcaatctgaatttgccaccagattggatcaatttgtgctccat 36745152  T
Q  396 tttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagg 495  Q
    | | ||||||| ||||| ||||||||||||||||| |||||||||||  ||||| | ||    | ||||| ||||||||| ||| ||||||| |||||||    
T  36745151 tataaaggtgacatgatcagttcaatccgagtaaaatttccattaggcaatgaacacagggatgccattgatagattgatctccaaaggaattgctaagg 36745052  T
Q  496 gagccaaaagtattgaacttctattgtcatatgaaacaaacgata 540  Q
    | |||||| ||||||||||||| || |||| ||||||||| ||||    
T  36745051 gtgccaaacgtattgaacttctcttctcatctgaaacaaatgata 36745007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 371 - 684
Target Start/End: Original strand, 37883351 - 37883668
Alignment:
Q  371 aagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaatatagatcggtcattggtaga 470  Q
    |||||||||||||||||||||||||  |||||||   ||||| |||||||||||| | ||||||||||||||||||||| | | |   ||||||| | ||    
T  37883351 aagattggatcaattcatgctgcatcatcaaggtaccatgatcagttcaatccgactcaattttccattaggtgatgaacacaaagatgtcattgattga 37883450  T
Q  471 ttgattt----cccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaaacgatagggattttgttgtggaaatagagcca 566  Q
    ||||||     || ||||| | |||||||| | |||| |||||||||  || || ||||||  ||  |  ||||   ||||| || || |  ||||||||    
T  37883451 ttgattgattaccaaaggagttgctaagggtgtcaaacgtattgaaccactcttctcatatataattagtgatacttattttattttgaatctagagcca 37883550  T
Q  567 tacaaattttccatgactctcttatctcacactgattctctgacgaatttgcatttacagaagtgctgcctagtagcacctatggacttctctggtttga 666  Q
    |||||||||||| | |||||||||||| |||| |||||||| ||| || || |  |||| || ||  ||||||||||||||||||| || ||||| ||||    
T  37883551 tacaaattttcctttactctcttatctgacaccgattctctaacgtatctgtacctacaaaactgtcgcctagtagcacctatggaattttctggattga 37883650  T
Q  667 agaatttaagaacacttg 684  Q
    ||||||| ||||| ||||    
T  37883651 agaatttgagaactcttg 37883668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 147 - 534
Target Start/End: Original strand, 34145890 - 34146272
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatgg 246  Q
    |||||||||||||  |||| ||||   ||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||| |   || |||| ||||||    
T  34145890 tgagttgcctgatcatattatatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatgg 34145989  T
Q  247 cgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttca 346  Q
     ||||||| ||||||||     |||||| |||||| | | ||||| |||      |||||| |||| |||||| ||  |  ||| |||||| |||  |||    
T  34145990 ggattaaggatggacct-----taacttcgatctctataccatgtctga------ctataacacagatcaagacttgtcacaaatccttcctctctgtca 34146078  T
Q  347 agggtttc------aatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccatta 440  Q
    | ||||||      ||||||||||||||| ||||||||||||||| ||||| |||| | ||||||  |||||  |||| || |||||||| |||||||||    
T  34146079 aaggtttcactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccatta 34146178  T
Q  441 ggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
     || ||||| ||||    ||||||| ||||||||| ||| ||||||| |||||||| ||| ||  |||| ||||||| || || | ||||||||    
T  34146179 tgtaatgaacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccgaacatattcaacttctcttctcttttgaaacaa 34146272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 147 - 534
Target Start/End: Complemental strand, 34181545 - 34181163
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatgg 246  Q
    |||||||||||||  |||| ||||   ||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||| |   || |||| ||||||    
T  34181545 tgagttgcctgatcatattatatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatgg 34181446  T
Q  247 cgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttca 346  Q
     ||||||| ||||||||     |||||| |||||| | | ||||| |||      |||||| |||| |||||| ||  |  ||| |||||| |||  |||    
T  34181445 ggattaaggatggacct-----taacttcgatctctataccatgtctga------ctataacacagatcaagacttgtcacaaatccttcctctctgtca 34181357  T
Q  347 agggtttca------atctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccatta 440  Q
    | |||||||      |||||||||||||| ||||||||||||||| ||||| |||| | ||||||  |||||  |||| || |||||||| |||||||||    
T  34181356 aaggtttcactttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccatta 34181257  T
Q  441 ggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
     || ||||| ||||    ||||||| ||||||||| ||| ||||||| |||||||| ||| ||  |||| ||||||| || || | ||||||||    
T  34181256 tgtaatgaacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccgaacatattcaacttctcttctcttttgaaacaa 34181163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 351 - 534
Target Start/End: Original strand, 33860159 - 33860342
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaat 450  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||| | ||||||  |||||  |||| || |||||||| ||||||||| || |||||     
T  33860159 tttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatgatccgttccattcgagtaaaatttccattatgtaatgaac 33860258  T
Q  451 atagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
    ||||    ||||||| ||||||||| ||| ||||||| |||||||| ||| ||  |||| ||||||| || || | ||||||||    
T  33860259 atagggatgtcattgatagattgatctccaaaggaattgctaagggtgccgaacatattcaacttctcttctcttctgaaacaa 33860342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 147 - 449
Target Start/End: Complemental strand, 45585439 - 45585158
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatgg 246  Q
    |||||||||||||  |||| ||||   ||| ||||| ||||||| |||||| |||||||||||||| | |||||| ||||| |   || |||| || |||    
T  45585439 tgagttgcctgatcatattatatcttatatcttttccaagttagctttgaaggatttggtgaaaacaagtgcattatccaaacaatggattcatgattgg 45585340  T
Q  247 cgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttca 346  Q
     ||||||| ||||||||     ||||||||||| ||| | |||||||||      |||||| ||| ||||||| ||||| |||||||||||||||         
T  45585339 ggattaaggatggacct-----taactttgatcaccataccatgtttga------ctataacacaattcaagacttaccaaaaagccttccactc----- 45585256  T
Q  347 agggtttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgat 446  Q
        ||||||||||||||||||| ||||||||||||||| ||||| || | | ||||||  |||| | |||| ||||||||||| |||||||||||| ||    
T  45585255 ----tttcaatctgaatttgccacaagattggatcaatttatgctccactgtaaaggtgccatga-tcgttccatccgagtaaaatttccattaggtaat 45585161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 147 - 441
Target Start/End: Complemental strand, 35073832 - 35073543
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatgg 246  Q
    |||||||||||||| |||| ||||   ||||||||| ||||||| |||||| |||||||||||||| | ||||||||| || ||  || |||| ||||||    
T  35073832 tgagttgcctgattctattatatcttatatattttccaagttagctttgaaggatttggtgaaaactagtgcattgtctaaacgatgggttcacgaatgg 35073733  T
Q  247 cgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttca 346  Q
     ||||||| | |||||| |||||     |||||| || | |||||||||      |||||| |||  |||||| ||||| || | |||||||||| ||||    
T  35073732 ggattaaggacggacctcaactt-----tgatcttcataccatgtttga------ctataacacaactcaagacttaccaaacatccttccactctttca 35073644  T
Q  347 agggtttca------atctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccatta 440  Q
    |   |||||      |||||||||| ||| ||||||||||||||| ||||| |||| | |||||   || || |||||||||||||| ||||||||||||    
T  35073643 aatatttcactttcaatctgaatttaccacaagattggatcaatttatgctccattataaaggtcccatcatcagttcaatccgagtcaattttccatta 35073544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 142 - 441
Target Start/End: Complemental strand, 35084888 - 35084594
Alignment:
Q  142 aagattgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcagg 241  Q
    |||| |||||||||||||| |||| ||||   ||| ||||| ||||||| |||||| |||||||||||||| | ||||||||| || ||  || |||| |    
T  35084888 aagagtgagttgcctgattctattatatcttatatcttttccaagttagctttgaaggatttggtgaaaactagtgcattgtctaaacgatgggttcacg 35084789  T
Q  242 aatggcgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactc 341  Q
    ||||| |||||||   |||||| |||||     |||||| || | |||||||||      |||||| ||| ||||||| ||||| || | ||||||||||    
T  35084788 aatggggattaagggcggacctcaactt-----tgatcttcataccatgtttga------ctataacacaattcaagacttaccaaacatccttccactc 35084700  T
Q  342 cttcaagggtttca------atctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttc 435  Q
     |||||   |||||      |||||||||| ||| ||||||||||||||| ||||| |||| | |||||   || || |||||||||||||| |||||||    
T  35084699 tttcaaatatttcactttcaatctgaatttaccacaagattggatcaatttatgctccattataaaggtcccatcatcagttcaatccgagtcaattttc 35084600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 352 - 540
Target Start/End: Original strand, 43027207 - 43027399
Alignment:
Q  352 ttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaata 451  Q
    |||||||| ||||||||| | |||| |||||||| ||||| |||| | ||||||  || ||  |||||||||||||||| |||||||||||| ||||| |    
T  43027207 ttcaatctcaatttgccacaggattcgatcaatttatgctccattataaaggtgccatcatccgttcaatccgagtaaaatttccattaggtaatgaaca 43027306  T
Q  452 tagatcggtcattggtagattgatttcccaaggaa----tcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaaacgata 540  Q
    |||    | ||||| ||||||||| ||| ||||||    | |||||||| | |||| | ||||||||||| ||||||| ||||||||| ||||    
T  43027307 tagggatgccattgatagattgatctccaaaggaattgcttgctaagggggtcaaacgaattgaacttctcttgtcatctgaaacaaatgata 43027399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 695 - 801
Target Start/End: Original strand, 13311869 - 13311975
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||||||||||||||||| | | | ||||||| ||| |||||||||| | | ||| ||||||| ||||||||||  | ||    
T  13311869 ttttgattcgagatcgggagtcagttctttggttcaagttaggtgttgggctgttttggcgttctttcgatggactagaggttgagaggtggtgggagct 13311968  T
Q  795 gattgat 801  Q
    |||||||    
T  13311969 gattgat 13311975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 136 - 441
Target Start/End: Complemental strand, 35100195 - 35099895
Alignment:
Q  136 aagcccaagattgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggc 235  Q
    |||| ||||| |||||||||||||| |||| ||||   ||| ||||| ||||||| |||||| |||||||||||||| | |||||||||  | ||  ||     
T  35100195 aagctcaagagtgagttgcctgattctattatatcttatatcttttccaagttagctttgaaggatttggtgaaaactagtgcattgtctgaacgatggg 35100096  T
Q  236 ttcaggaatggcgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagcctt 335  Q
    |||| |||||| ||||||| | |||||| |||||     |||||| || | |||||||||      |||||| ||| ||||||| ||||| || | ||||    
T  35100095 ttcacgaatggggattaaggacggacctcaactt-----tgatcttcataccatgtttga------ctataacacacttcaagacttaccaaacatcctt 35100007  T
Q  336 ccactccttcaagggtttca------atctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaa 429  Q
    |||||| |||||   |||||      |||||||||| ||| ||||||||||||||| ||||| |||| | |||||   || || |||||||||||||| |    
T  35100006 ccactctttcaaatatttcactttcaatctgaatttaccacaagattggatcaatttatgctccattataaaggtcccatcatcagttcaatccgagtca 35099907  T
Q  430 attttccattag 441  Q
    | ||||||||||    
T  35099906 aatttccattag 35099895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 854 - 947
Target Start/End: Original strand, 36449284 - 36449376
Alignment:
Q  854 gtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    ||||||||||| | || |||||| | ||||||||||||||||||||||||| || ||||| |||||| ||| ||||||||||||||| ||||||    
T  36449284 gtgttcttttgtggtgagtagtgacgatgagtggttatggatatcgtttttcagcggttg-tttcgtgaagtagtctattttaggtggtgatgt 36449376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 38597840 - 38597917
Alignment:
Q  61 ttatgcttttaatttaattataattctggtgtgtgttcattactaattgcagtagcaatgaagaggaggtctaaaaag 138  Q
    ||||||||||||| || ||  ||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||||||    
T  38597840 ttatgcttttaatatagttcaaattctggtgtgtgttcgttattaactgcagtaacaatgaagaggaggtctaaaaag 38597917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 11379178 - 11379070
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||||||| |||||||||||| ||||||||||||  ||| ||||||||||||| || ||||  ||||| ||||||||||| | |||||||| |  |    
T  11379178 ttttgattcgagatcgggagtcagtactttggttcaagttttggttttgggcttttttggtgttc--ttggttgaccagaggtttataggtggtggaggc 11379081  T
Q  794 tgattgatctt 804  Q
    |||||||||||    
T  11379080 tgattgatctt 11379070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 38173687 - 38173572
Alignment:
Q  148 gagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggc 247  Q
    ||||||||||||||| || ||||   ||| |||||||||||| ||||||| |||||||||||||| | || ||||||||| ||  ||||||| ||||||     
T  38173687 gagttgcctgattgtgttatatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaacgatggcttcatgaatgga 38173588  T
Q  248 gattaagaatggacct 263  Q
    ||| |||||| |||||    
T  38173587 gatcaagaattgacct 38173572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 806 - 903
Target Start/End: Original strand, 9107304 - 9107401
Alignment:
Q  806 aatagtggttcaacttaggtgttgacgtatgggtggttcatttagagggt-gttcttttgggatgtgtagtggcaatgagtggttatggatatcgtttt 903  Q
    |||||||| ||||||| |||| ||| | ||||||| |||||||||||||  ||| |||||||||| |||||||| ||| ||||||||||||||||||||    
T  9107304 aatagtggctcaactttggtgatgagg-atgggtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgtttt 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 22568163 - 22568053
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagctt-gtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||||| | |||||||| |||| ||||||||||| || | ||||||  |||||||| ||||||| ||  ||||  ||||| |||||||||||||||    
T  22568163 ttttgattcgtgatcgggagttagttttttggttcaagttttgattttggattttttaggtgttctttcggcggaccgaaggttgagaggtggtgaaaac 22568064  T
Q  794 tgattgatctt 804  Q
    |||||||||||    
T  22568063 tgattgatctt 22568053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 351 - 441
Target Start/End: Complemental strand, 35083712 - 35083622
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattag 441  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||| | ||||||  || ||   ||||||||||||||| ||||||||||    
T  35083712 tttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatcatccattcaatccgagtaaaatttccattag 35083622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 695 - 750
Target Start/End: Original strand, 12480916 - 12480971
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttt 750  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||||    
T  12480916 ttttgattcgagatcgggagtcagttctttggttcaagtttggtttttggcttttt 12480971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 842 - 940
Target Start/End: Original strand, 23983400 - 23983499
Alignment:
Q  842 ttcatttagag-ggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtg 940  Q
    ||||||||||| ||| |||||||||| || ||||||   ||| || |||||| ||||||||||| ||||||||||||||| || |||||| |||||||||    
T  23983400 ttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtctgttttaggtg 23983499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 38286733 - 38286614
Alignment:
Q  150 gttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcga 249  Q
    ||||||||||||| || ||||   ||| |||||||||||| ||||||| |||||||||||||| | || ||||||||| |   ||||||| |||||| ||    
T  38286733 gttgcctgattgtgttatatcatatatcttttcaaagttatgtttgaaggatttggtgaaaacaagtgtattgtccaaactatggcttcacgaatgggga 38286634  T
Q  250 ttaagaatggacctaaactt 269  Q
    || || |||||||| |||||    
T  38286633 ttcaggatggacctcaactt 38286614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 920
Target Start/End: Complemental strand, 9428156 - 9427926
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| || | ||||||||||| ||||| || ||| | ||||||| ||| || ||||||| ||| |||||||||||  || |||||| || ||    
T  9428156 ttttgattcgagatcagaagtcagttcttcggttctagtttggtcttgggctgttttggtgttctttcggtggaccagaggttgtgaagtggtggaagct 9428057  T
Q  795 gattgatctta--aatagtggttcaact---taggtgttgacgtatgggtggttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggt 888  Q
     ||||||||    |||||||| ||||||   |||||||||| ||    ||  ||||||||||||| || | ||| |||||| |||||| | | | |||||    
T  9428056 -attgatctatggaatagtggctcaactaattaggtgttgaggtcgatgtatttcatttagagggatgctatttagggatgagtagtgacgacgggtggt 9427958  T
Q  889 tatggatatcgttttttagtggttgttttcgt 920  Q
    |||||||||| ||||||||||||||| |||||    
T  9427957 tatggatatcattttttagtggttgtcttcgt 9427926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 35083908 - 35083786
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatgg 246  Q
    ||||||||||||| || || ||||   ||| ||||| ||||||| |||||| |||||||||||||| | |||||||||||| ||  || |||| ||||||    
T  35083908 tgagttgcctgatagtgttatatcttatatcttttccaagttagctttgaaggatttggtgaaaactagtgcattgtccaaacgatgggttcacgaatgg 35083809  T
Q  247 cgattaagaatggacctaaactt 269  Q
     ||||||| | |||||| |||||    
T  35083808 ggattaaggacggacctcaactt 35083786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 33859991 - 33860076
Alignment:
Q  178 ttttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatggacct 263  Q
    ||||| || |||| ||||||||||||||||||||||| |||||||||||| |   || |||| |||||| ||||||| ||||||||    
T  33859991 ttttccaatttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacct 33860076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 443
Target Start/End: Complemental strand, 38286548 - 38286460
Alignment:
Q  355 aatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggt 443  Q
    ||||||||||| ||  |||| ||||||||||||||||||||| ||||||||| |||||  | ||||||||| ||   ||||||||||||    
T  38286548 aatctgaatttaccgcaagagtggatcaattcatgctgcattatcaaggtgacatgatccggtcaatccgactagtgtttccattaggt 38286460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 851 - 917
Target Start/End: Complemental strand, 40292923 - 40292856
Alignment:
Q  851 agggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgtttttt-agtggttgtttt 917  Q
    ||||||||||||| || || |||| ||| |||||||||||||||||||||||||| | ||||||||||    
T  40292923 agggtgttcttttagggtgagtagaggcgatgagtggttatggatatcgttttttcaatggttgtttt 40292856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 6716787 - 6716679
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| | ||||| |||||| |  |||||| ||| || | || ||  |||||||||| || ||    
T  6716787 ttttgattcgagatcgggagtcagttctttggctcaagtttggtcttgggttttttatggtttctttcggtggatc-gaagtcgagaggtggtggaagct 6716689  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  6716688 gattgatctt 6716679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 37795019 - 37795072
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||||    
T  37795019 ttttgattcgagatcgggagtcagttctttgagtcaagttggtttttgggcttt 37795072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 684
Target Start/End: Original strand, 42796716 - 42796837
Alignment:
Q  563 gccatacaaattttccatgactctcttatctcacactgattctctgacgaatttgcatttacagaagtgctgcctagtagcacctatggacttctctggt 662  Q
    ||||||||||||| || | |||||||||||| ||  ||||||||||||| || ||||  | || || |||| |||| ||| |||| |||||||||||||     
T  42796716 gccatacaaatttccccttactctcttatctgactttgattctctgacgtatatgcacctgcaaaactgcttcctactagaacctttggacttctctgga 42796815  T
Q  663 ttgaagaatttaagaacacttg 684  Q
    || || ||||| ||||| ||||    
T  42796816 ttcaaaaatttgagaactcttg 42796837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 8745183 - 8745239
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||||||||||| |||||| ||||||| |||| ||||| ||| ||||||||||||||    
T  8745183 ttttgattcgagatcgggattcagttcgttggatcaagtttggttttgggcttttta 8745239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 693 - 804
Target Start/End: Complemental strand, 24324851 - 24324739
Alignment:
Q  693 aattttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaa 791  Q
    |||||||||||||| |||||||||| |||||||| |||||  ||| |||||||||||||| |  |||||| ||| || | |||||  || ||||||| ||    
T  24324851 aattttgattcgagatcgggagtcaattctttggctcaagttttggttttgggctttttatggtttctttaggtggatcggaggtcgaggggtggtggaa 24324752  T
Q  792 actgattgatctt 804  Q
     |||| |||||||    
T  24324751 gctgaatgatctt 24324739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 36745398 - 36745318
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaa 227  Q
    |||||||||||||||| || ||||   ||| ||||| ||||||| |||||| |||||||||||||| | |||||| |||||    
T  36745398 tgagttgcctgattgtgttatatcttatatcttttccaagttagctttgaaggatttggtgaaaacaagtgcattatccaa 36745318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 750
Target Start/End: Complemental strand, 46133329 - 46133273
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagctt-gtttttgggcttttt 750  Q
    |||||||| ||| ||||||||||||||| ||||||||| || |||||||||||||||    
T  46133329 ttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggcttttt 46133273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 806 - 912
Target Start/End: Complemental strand, 12546345 - 12546239
Alignment:
Q  806 aatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttt 904  Q
    |||||||| ||| |||||||| |||||   | ||| |||||||||| ||||||| |||||||||  |||||||| | |||| ||||||||| ||||||||    
T  12546345 aatagtggctcagcttaggtgatgacgacggagtgtttcatttagaggggtgttattttgggataagtagtggcgacgagt-gttatggatttcgttttt 12546247  T
Q  905 tagtggtt 912  Q
     |||||||    
T  12546246 aagtggtt 12546239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 761
Target Start/End: Original strand, 3478382 - 3478448
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttt 761  Q
    |||||||||||| |||||||| |||||||||| ||||| ||  ||||||||||| | || |||||||    
T  3478382 ttttgattcgagatcgggagttagttctttggctcaagattagttttgggctttgttggtgttcttt 3478448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 3867146 - 3867200
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    ||||||||||||  |||||||||||||||||  ||||| | ||||||||||||||    
T  3867146 ttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggctttt 3867200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 6584939 - 6584993
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||| ||||||| | ||| | ||||||||||||||    
T  6584939 ttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggctttt 6584993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 913
Target Start/End: Original strand, 9349911 - 9349972
Alignment:
Q  851 agggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttg 913  Q
    |||||||||||||||| || |||||||| | |||| ||||||||| ||||||| |||||||||    
T  9349911 agggtgttcttttggggtgagtagtggcgacgagt-gttatggatgtcgttttctagtggttg 9349972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 885 - 947
Target Start/End: Complemental strand, 22567970 - 22567909
Alignment:
Q  885 tggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    |||||||||||| ||||||| |||||||| |||||| || |||||| ||||||||| ||||||    
T  22567970 tggttatggataccgtttttcagtggttg-tttcgtgaaagagtctgttttaggtggtgatgt 22567909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 34389992 - 34390046
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||| ||||||| | ||| | ||||||||||||||    
T  34389992 ttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggctttt 34390046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 3419707 - 3419654
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||| ||||||  ||||| | |||||||||||||    
T  3419707 ttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggcttt 3419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 9349779 - 9349832
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| |||||||||| ||||  |||||||| ||| |||||||||||    
T  9349779 ttttgattcgagatcgggagtcaattctcaggttcaagtttgattttgggcttt 9349832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 10244212 - 10244265
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||| ||||    
T  10244212 ttttgattcgagatcgggagtcagttctttgactcaagttagtttttggccttt 10244265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 684
Target Start/End: Complemental strand, 38157738 - 38157689
Alignment:
Q  635 cctagtagcacctatggacttctctggtttgaagaatttaagaacacttg 684  Q
    ||||||||||||| | ||||||||||| ||||||||||| ||||| ||||    
T  38157738 cctagtagcacctcttgacttctctggattgaagaatttgagaactcttg 38157689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 38306291 - 38306344
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| | ||||||||||||||||  ||||| | |||||||||||||    
T  38306291 ttttgattcgagattgggagtcagttctttgactcaagttggtttttgggcttt 38306344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 103; Significance: 9e-51; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 695 - 947
Target Start/End: Original strand, 15944049 - 15944299
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttt-tgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||| |||||| ||||||||||| ||||||||| |||||||| |||||||||||||  |||||||||| |||||||||||  ||||||| | ||      
T  15944049 ttttgattagagttctggagtcagttccttggttcaatcttgttttttgggctttttaggttttcttttggttgaccagaggttttgaggtggaggaagt 15944148  T
Q  794 tgattgatcttaaatagtggttcaacttaggtgttgacgtatgggtggttcatttagagggtgttcttttgggatgtgtagtggcaatgagtggttatgg 893  Q
    || |||||||| | |||||| ||||||||| || || |||| ||||||||| |||||| |||||| ||||||| ||||||||||||||||||  ||||||    
T  15944149 tgtttgatcttgagtagtggctcaacttagttgatgtcgtaggggtggttcttttagaaggtgttattttgggttgtgtagtggcaatgagt--ttatgg 15944246  T
Q  894 atatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    ||   |||||||||| |||| |||||||||||||||| ||||||||| ||||||    
T  15944247 attctgttttttagtagttg-tttcgtaaaggagtctgttttaggtggtgatgt 15944299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 354 - 684
Target Start/End: Complemental strand, 4164515 - 4164182
Alignment:
Q  354 caatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaatata 453  Q
    |||||| ||||||||| || |||||||||||||||| ||||||  |||||||  |||||   ||||||||||||||||||||||||||||||  || |||    
T  4164515 caatctcaatttgccacaatattggatcaattcatgatgcattaccaaggtgccatgatccattcaatccgagtaaattttccattaggtgaccaacata 4164416  T
Q  454 gatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaaacga---tagggattttgt 550  Q
    |    |||||||  | |||||||||| ||||||| |||||||| |||||| |||||||||| ||||| ||  | ||||| ||  |   ||  |||||| |    
T  4164415 gggatgtcattgacaaattgatttccaaaggaattgctaagggtgccaaacgtattgaactgctattctcgaacgaaactaattatactactgattttat 4164316  T
Q  551 tgtggaaatagagccatacaaattttccatgactctcttatctcacactgattctctgacgaatttgcatttacagaagtgctgcctagtagcacctatg 650  Q
    | | |||   ||||||||||||||| || | |||||||||||| ||||  | ||||| ||  || ||||  || |||| |||  |||||||||||| |||    
T  4164315 ttttgaaggggagccatacaaatttccctttactctcttatctgacacatactctctcacacatctgcacctagagaaatgcctcctagtagcaccaatg 4164216  T
Q  651 gacttctctggtttgaagaatttaagaacacttg 684  Q
    ||||||||||| || |||||||| ||||| ||||    
T  4164215 gacttctctggattcaagaatttgagaactcttg 4164182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 354 - 684
Target Start/End: Complemental strand, 4226136 - 4225803
Alignment:
Q  354 caatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaatata 453  Q
    |||||| ||||||||| || |||||||||||||||| ||||||  |||||||  |||||   ||||||||||||||||||||||||||||||  || |||    
T  4226136 caatctcaatttgccacaatattggatcaattcatgatgcattaccaaggtgccatgatccattcaatccgagtaaattttccattaggtgaccaacata 4226037  T
Q  454 gatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaaacga---tagggattttgt 550  Q
    |    |||||||  | |||||||||| ||||||| |||||||| |||||| |||||||||| ||||| ||  | ||||| ||  |   ||  |||||| |    
T  4226036 gggatgtcattgacaaattgatttccaaaggaattgctaagggtgccaaacgtattgaactgctattctcgaacgaaactaattatactactgattttat 4225937  T
Q  551 tgtggaaatagagccatacaaattttccatgactctcttatctcacactgattctctgacgaatttgcatttacagaagtgctgcctagtagcacctatg 650  Q
    | | |||   ||||||||||||||| || | |||||||||||| ||||  | ||||| ||  || ||||  || |||| |||  |||||||||||| |||    
T  4225936 ttttgaaggggagccatacaaatttccctttactctcttatctgacacatactctctcacacatctgcacctagagaaatgcctcctagtagcaccaatg 4225837  T
Q  651 gacttctctggtttgaagaatttaagaacacttg 684  Q
    ||||||||||| || |||||||| ||||| ||||    
T  4225836 gacttctctggattcaagaatttgagaactcttg 4225803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 351 - 534
Target Start/End: Original strand, 25568735 - 25568918
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaat 450  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||| | ||||||  || ||  |||| || |||||||| ||||||||| || |||||     
T  25568735 tttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatgaac 25568834  T
Q  451 atagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
    ||||    ||||||  ||||||||| ||| ||||||| |||||||| ||||||  |||||||||||| || || | ||||||||    
T  25568835 atagggatgtcattcatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttctgaaacaa 25568918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 351 - 534
Target Start/End: Original strand, 26002603 - 26002786
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaat 450  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||| | ||||||  || ||  |||| || |||||||| ||||||||| || |||||     
T  26002603 tttcaatctgaatttgccacaagattggatcaatttatgctccattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatgaac 26002702  T
Q  451 atagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
    ||||    ||||||| ||||||||| ||| ||||||| ||||| || ||||||  |||||||||||| || || | ||||||||    
T  26002703 atagggatgtcattgatagattgatctccaaaggaattgctaatggtgccaaacatattgaacttctcttctcttctgaaacaa 26002786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 351 - 534
Target Start/End: Original strand, 25563120 - 25563303
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaat 450  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||  || ||  |||| || |||||||| ||||||||| || || ||     
T  25563120 tttcaatctgaattttccacaagattggatcaatttatgctgcattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatcaac 25563219  T
Q  451 atagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
    ||||    ||||||  ||||||||| ||| ||||||| |||||||| ||||||  |||||||||||| || || | ||||||||    
T  25563220 atagggatgtcattcatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttctgaaacaa 25563303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 351 - 534
Target Start/End: Original strand, 26102632 - 26102815
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattaggtgatgaat 450  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||  || ||  |||| || |||||||| ||||||||| || || ||     
T  26102632 tttcaatctgaattttccacaagattggatcaatttatgctgcattataaaggtgccatcatccgttccattcgagtaaaatttccattatgtaatcaac 26102731  T
Q  451 atagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttctattgtcatatgaaacaa 534  Q
    ||||    ||||||  ||||||||| ||| ||||||| |||||||| ||||||  |||||||||||| || || | ||||||||    
T  26102732 atagggatgtcattcatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttctcttctcttctgaaacaa 26102815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 26216070 - 26215961
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||||||||||||||| ||||||   ||| ||||||||||||| || ||||||||||| |||| ||| ||  | ||||||| || ||    
T  26216070 ttttgattcgagatcgggagtcagttcttcggttcagttttggttttgggcttttttggtgttcttttggtggaccggagattgcgcggtggtggaagct 26215971  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  26215970 gattgatctt 26215961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 25562950 - 25563041
Alignment:
Q  178 ttttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatggacctaaactt 269  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||| |   || |||| |||||| ||||||| |||||||| |||||    
T  25562950 ttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggaccttaactt 25563041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 269
Target Start/End: Original strand, 26102462 - 26102553
Alignment:
Q  178 ttttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatggacctaaactt 269  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||| |   || |||| |||||| ||||||| |||||||| |||||    
T  26102462 ttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggaccttaactt 26102553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 25568567 - 25568652
Alignment:
Q  178 ttttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcgattaagaatggacct 263  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||||||| |   || |||| |||||| ||||||| ||||||||    
T  25568567 ttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaaacaatggattcacgaatggggattaaggatggacct 25568652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 695 - 774
Target Start/End: Original strand, 21266143 - 21266222
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagag 774  Q
    |||||||||||| |||||||| |||| | ||||||||| ||| ||||||||||| | || ||||||||||| ||||||||    
T  21266143 ttttgattcgagatcgggagttagttatgtggttcaagtttggttttgggctttgttggtgttcttttggtggaccagag 21266222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 26002406 - 26002484
Alignment:
Q  149 agttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaa 227  Q
    |||||||||||  |||| ||||   ||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  26002406 agttgcctgatcatattatatcttatatcttttccaagttagctttgaaagatttggtgaaaaccagtgcattgtccaa 26002484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 26534770 - 26534657
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctt---tggttcaagcttgtttttgggct-ttttaggcgttcttttggtagaccagaggttaagaggtggtgaa 790  Q
    |||||||||||| | ||||||||||||||   ||||||||| ||| ||||||||| ||||||| ||||||| ||| ||||  |||||  | ||||||| |    
T  26534770 ttttgattcgagattgggagtcagttcttctttggttcaagtttggttttgggcttttttaggtgttctttcggtggaccgaaggttgtgcggtggtgga 26534671  T
Q  791 aactgattgatctt 804  Q
    | ||||||||||||    
T  26534670 agctgattgatctt 26534657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 695 - 943
Target Start/End: Complemental strand, 33968664 - 33968417
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||||||| |||||||||||||||||||||||||  ||| ||||||  |||||    |||||||||   ||||  ||||| |||| ||||| || |    
T  33968664 ttttgattcgagatcgggagtcagttctttggttcaagttttgattttggatttttt---tgttcttttgacggaccgaaggttgagagatggtggaagc 33968568  T
Q  794 tgattgatctt--aaatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggtta 890  Q
    |||||||||||   |||||||| ||||||| || | | | |     ||| |||||||||| ||||||| |||||||||| ||||||   |||  ||||||    
T  33968567 tgattgatctttagaatagtggctcaactttggcgataaggacaaagtgtttcatttagaggggtgttattttgggatgagtagtgatgatg-ctggtta 33968469  T
Q  891 tggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatg 943  Q
    |||||| | ||||| |||||| ||||| ||||| |||||| ||||||||||||    
T  33968468 tggataccatttttcagtggtcgtttt-gtaaaagagtctgttttaggtgatg 33968417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 9224071 - 9224125
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| |||||||||||||||||||||||   ||| ||||||||||||    
T  9224071 ttttgattcgagatcgggagtcagttctttggttcagttttggttttgggctttt 9224125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 20701854 - 20701745
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||||||| |||||||||| | ||| ||| |||||||||||||| |  |||||| ||| || | |||||  |||||| ||| || ||    
T  20701854 ttttgattcgagatcgggagttagttctttggcttaagtttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtagtggaagct 20701755  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  20701754 gaatgatctt 20701745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 763
Target Start/End: Original strand, 21265016 - 21265084
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttg 763  Q
    |||||||||||| |||||||| |||| | ||||||||| ||| ||||||||||| | || |||||||||    
T  21265016 ttttgattcgagatcgggagttagttatctggttcaagtttggttttgggctttgttggtgttcttttg 21265084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 884 - 940
Target Start/End: Complemental strand, 32935185 - 32935129
Alignment:
Q  884 gtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtg 940  Q
    ||||||||| ||||||||||| || ||  |||||||| |||||||||||||||||||    
T  32935185 gtggttatgtatatcgtttttgagggggcgttttcgttaaggagtctattttaggtg 32935129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 3117523 - 3117576
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    ||||||||| || ||||||||||||||||||  ||||| | |||||||||||||    
T  3117523 ttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggcttt 3117576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 871 - 904
Target Start/End: Original strand, 34101393 - 34101426
Alignment:
Q  871 gtagtggcaatgagtggttatggatatcgttttt 904  Q
    |||||||| |||||||||||||||||||||||||    
T  34101393 gtagtggcgatgagtggttatggatatcgttttt 34101426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 696 - 947
Target Start/End: Original strand, 4471954 - 4472206
Alignment:
Q  696 tttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaactg 795  Q
    ||||||||||| |||||||||||||||||| |||||| ||||||||||||||| | || ||||||||||| |||| ||||| || |||||||  || |||    
T  4471954 tttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggctttattggtgttcttttggtggaccggaggtcaa-aggtggtagaagctg 4472052  T
Q  796 attgatctt--aaatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggttatg 892  Q
    |||||||||   |||||||| |||||||| |||  |||||| ||||  || ||||||| ||||||| ||||||| ||| ||||||| ||  |||||||||    
T  4472053 attgatctttagaatagtggctcaacttaagtgacgacgtaggggtaatttatttagaggggtgttattttgggttgtctagtggcgattggtggttatg 4472152  T
Q  893 gatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    |||| ||||||| ||||| |  |||| ||||||| ||||||||||||| ||||||    
T  4472153 gataacgtttttcagtgg-tcatttcttaaaggactctattttaggtggtgatgt 4472206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 695 - 824
Target Start/End: Original strand, 2062919 - 2063048
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||| ||||||| ||||| ||| ||||||||||||| || ||||||| |||  ||||||||||  ||||| ||| |||||    
T  2062919 ttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggcttttttggtgttctttcggtgtaccagaggttgtgaggttgtggaaact 2063018  T
Q  795 gattgatcttaaatagtggttcaacttagg 824  Q
    |||||||||| |||||||| ||| ||||||    
T  2063019 gattgatctttaatagtggctcagcttagg 2063048  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 695 - 947
Target Start/End: Complemental strand, 22885184 - 22884931
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||||| | ||| || ||||||| ||| ||||||||||| |||||||||| ||  |    
T  22885184 ttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaagtt 22885085  T
Q  795 gattgatct-ta-aatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggttat 891  Q
    ||||||||| || |||||||| ||   ||||||| ||| |   | ||| |||||||||| ||||||| ||||||||   | |||||| | | | ||||||    
T  22885084 gattgatctatagaatagtggctcgttttaggtgatgaggacggtgtgtttcatttagaggggtgttattttgggacaagcagtggcgacg-ggggttat 22884986  T
Q  892 ggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    |||| |||||| | |||||| | |||||| ||||||||| ||||||||| ||||||    
T  22884985 ggatttcgtttgtcagtggtcg-tttcgtgaaggagtctgttttaggtggtgatgt 22884931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 695 - 916
Target Start/End: Complemental strand, 33788683 - 33788459
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| | ||||||||||||||||||||| | |||  |||||| | ||| || ||||||| |||  |||||||||| |||||||||| || ||    
T  33788683 ttttgattcgagattgggagtcagttctttggttcaggtttggctttgggttgttttggtgttctttcggtgaaccagaggttgagaggtggtggaagct 33788584  T
Q  795 gattgatct-ta-aatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggttat 891  Q
    ||||||||| || | |||||| ||| |||||||| ||| |   ||||| |||||||||| ||||||| |||||||| | |||||||| |   ||||||||    
T  33788583 gattgatctatagattagtggctcagcttaggtgatgaggacggggtgtttcatttagaggggtgttattttgggacgagtagtggcgacaggtggttat 33788484  T
Q  892 ggatatcgttttttagtggttgttt 916  Q
    |||| | |||| | |||||||||||    
T  33788483 ggattttgtttgtcagtggttgttt 33788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 12410073 - 12409971
Alignment:
Q  302 ctataatacagttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaa 401  Q
    |||||||||| |||||||||| || ||| | ||||||||| |||||||| |||||||| |||||||||  |||||||||||| |||||||||||| ||||    
T  12410073 ctataatacacttcaagagttgccaaaatgtcttccactctttcaagggcttcaatctcaatttgccactagattggatcaagtcatgctgcattatcaa 12409974  T
Q  402 ggt 404  Q
    |||    
T  12409973 ggt 12409971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 302 - 404
Target Start/End: Complemental strand, 12422133 - 12422031
Alignment:
Q  302 ctataatacagttcaagagttaccgaaaagccttccactccttcaagggtttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaa 401  Q
    |||||||||| |||||||||| || ||| | ||||||||| |||||||| |||||||| |||||||||  |||||||||||| |||||||||||| ||||    
T  12422133 ctataatacacttcaagagttgccaaaatgtcttccactctttcaagggcttcaatctcaatttgccactagattggatcaagtcatgctgcattatcaa 12422034  T
Q  402 ggt 404  Q
    |||    
T  12422033 ggt 12422031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 695 - 916
Target Start/End: Original strand, 27740005 - 27740229
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    ||||||||| || ||| ||||||||  || |||||||| ||| | ||||| | ||| || ||||||| ||| ||||||||||| |||||||||| |||||    
T  27740005 ttttgattcaagatcgagagtcagtgtttcggttcaagtttggtcttgggttgttttggtgttctttcggtggaccagaggttgagaggtggtggaaact 27740104  T
Q  795 gattgatc--ttaaatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggttat 891  Q
    ||||||||  |  |||||||| ||||||||||  |||| |     ||| |||||||||| ||||||| || ||||||| |||||||| | ||||||||||    
T  27740105 gattgatctatggaatagtggctcaacttaggcattgaggacaatgtgtttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttat 27740204  T
Q  892 ggatatcgttttttagtggttgttt 916  Q
    | |||||||| || |||||| ||||    
T  27740205 gaatatcgttcttcagtggtagttt 27740229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 696 - 804
Target Start/End: Original strand, 18681096 - 18681204
Alignment:
Q  696 tttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaactg 795  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||  || |||| |||||| || ||||||||    |||||||||| |||    
T  18681096 tttgattcgagatcgggagtcagttctctggttcaagtttggttttgggcttttgtggtgttcctttggtggatcagaggttgcacggtggtgaaagctg 18681195  T
Q  796 attgatctt 804  Q
    | |||||||    
T  18681196 aatgatctt 18681204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 695 - 777
Target Start/End: Original strand, 16960012 - 16960094
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggtt 777  Q
    |||||||||||| ||| ||||||||||||||| ||||| ||| |||||||||| || || ||||||| ||| |||||||||||    
T  16960012 ttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggcttatttggtgttctttcggtggaccagaggtt 16960094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 15126461 - 15126352
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||| ||||||||| ||| | ||| ||||||||||||  || ||||||| ||| | || ||||||  ||||||||| |||||    
T  15126461 ttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggcttttatggtgttctttcggtggtccggaggttgtgaggtggtggaaact 15126362  T
Q  795 gattgatctt 804  Q
     |||||||||    
T  15126361 tattgatctt 15126352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 842 - 920
Target Start/End: Original strand, 20572267 - 20572345
Alignment:
Q  842 ttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgt 920  Q
    ||||||||||||| |||||||||| | || |||||||| ||| ||||||||||||||||||||| |||||| ||||||||    
T  20572267 ttcatttagaggggtgttcttttgaggtgagtagtggcgatg-gtggttatggatatcgtttttcagtggtcgttttcgt 20572345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 804
Target Start/End: Complemental strand, 27880181 - 27880073
Alignment:
Q  694 attttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    ||||||||||||| |||| |||||||| ||||||||||| |||  |||||||| ||| |  ||||||| ||| |||| |||| | ||||||||||||| |    
T  27880181 attttgattcgagatcggaagtcagttatttggttcaagtttg-gtttgggctgttttgttgttctttcggt-gaccggaggatgagaggtggtgaaagc 27880084  T
Q  794 tgattgatctt 804  Q
    |||||||||||    
T  27880083 tgattgatctt 27880073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 878
Target Start/End: Complemental strand, 25504960 - 25504773
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||| ||||||| ||||||||||||||||||||||| |  ||| ||||||||||||| || ||||||| | | ||||  ||||| |||||||||| || |    
T  25504960 ttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagc 25504861  T
Q  794 tgattgatctt--aaatagtggttcaacttaggtgttgacg-tatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggc 878  Q
    | |||||| ||   ||||| || ||||||| |||| ||| | ||| | || |||||||||| ||||||| |||||||||| ||||||||    
T  25504860 taattgatatttagaatagcggctcaactttggtgatgaggatat-gatgtttcatttagaggggtgttattttgggatgagtagtggc 25504773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 34230231 - 34230340
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||| ||||||| || |||||||||||||||| ||||| ||| |||||||||||||  |  |||||| ||| || | |||||| |||||||||| || ||    
T  34230231 tttttattcgagatcaggagtcagttctttggatcaagtttgattttgggctttttgtggtttctttcggtggatcggaggttgagaggtggtggaagct 34230330  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  34230331 gaatgatctt 34230340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 871 - 947
Target Start/End: Complemental strand, 27880008 - 27879932
Alignment:
Q  871 gtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    |||||||  |||||||||||||||| |||||||| || ||| |||||| | ||||||||| ||||||||| ||||||    
T  27880008 gtagtggtgatgagtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtgatgt 27879932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 3745364 - 3745474
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagctt-gtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||| ||||||| |||| |||||||||||||||| ||| || ||||||||||||||| |  ||||||| ||| || |||||||| | | |||||| |  |    
T  3745364 ttttaattcgagatcggaagtcagttctttggtttaagttttgtttttgggcttttttgttgttctttcggtggatcagaggtttaaaagtggtggaggc 3745463  T
Q  794 tgattgatctt 804  Q
    |||||||||||    
T  3745464 tgattgatctt 3745474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 14405228 - 14405282
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||||    
T  14405228 ttttgattcgagatcgggagtcagctctttggctcaagttggtttttgggctttt 14405282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 16952434 - 16952340
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggc-tttttaggcgttcttttggtagaccagaggttaagaggtggtg 788  Q
    |||||||||||| ||||||| ||||||||||| ||||| ||| |||||| | ||||| || ||||||| ||| || | |||||| ||||||||||    
T  16952434 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtg 16952340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 17023099 - 17023005
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggc-tttttaggcgttcttttggtagaccagaggttaagaggtggtg 788  Q
    |||||||||||| ||||||| ||||||||||| ||||| ||| |||||| | ||||| || ||||||| ||| || | |||||| ||||||||||    
T  17023099 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtg 17023005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 17060405 - 17060311
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggc-tttttaggcgttcttttggtagaccagaggttaagaggtggtg 788  Q
    |||||||||||| ||||||| ||||||||||| ||||| ||| |||||| | ||||| || ||||||| ||| || | |||||| ||||||||||    
T  17060405 ttttgattcgagatcgggagccagttctttggctcaagtttggttttggacattttttggtgttctttcggtggatcggaggttgagaggtggtg 17060311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 39338916 - 39338863
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||||    
T  39338916 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 39338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 1269513 - 1269569
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||||||||||| |||| |||||||||||||| ||||| ||| ||||||| ||||||    
T  1269513 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattttta 1269569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 894 - 941
Target Start/End: Complemental strand, 29139785 - 29139738
Alignment:
Q  894 atatcgttttttagtggttgttttcgtaaaggagtctattttaggtga 941  Q
    |||||||||||||||||||||||| || || |||||| ||||||||||    
T  29139785 atatcgttttttagtggttgtttttgtgaaagagtctcttttaggtga 29139738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 837 - 947
Target Start/End: Complemental strand, 43816363 - 43816254
Alignment:
Q  837 ggtggttcatttagagg-gtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctatttt 935  Q
    |||| |||||||||||| ||||| ||| |||| | |||||||| |||  ||  |||||||| ||||||| ||||||||||| ||| || |||||||||||    
T  43816363 ggtgtttcatttagaggagtgttttttcgggaggagtagtggcgatgc-tgtgtatggataccgtttttcagtggttgttt-cgtgaaagagtctatttt 43816266  T
Q  936 aggtgatgatgt 947  Q
    ||||| ||||||    
T  43816265 aggtggtgatgt 43816254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 7874321 - 7874375
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||| ||||||  ||||| | ||||||||||||||    
T  7874321 ttttgattcgagatcgggagtcagctctttgactcaagttggtttttgggctttt 7874375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 12411004 - 12410918
Alignment:
Q  184 aagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaat-ggcgattaagaatggacctaaactt 269  Q
    |||||| ||| ||| |||||||||||||| | | |||||||||| ||  ||||||| |||| || |||||||||||||||| |||||    
T  12411004 aagttaagttggaaggatttggtgaaaacaagtacattgtccaaacgatggcttcacgaatgggggattaagaatggacctcaactt 12410918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 269
Target Start/End: Complemental strand, 12423064 - 12422978
Alignment:
Q  184 aagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaat-ggcgattaagaatggacctaaactt 269  Q
    |||||| ||| ||| |||||||||||||| | | |||||||||| ||  ||||||| |||| || |||||||||||||||| |||||    
T  12423064 aagttaagttggaaggatttggtgaaaacaagtacattgtccaaacgatggcttcacgaatgggggattaagaatggacctcaactt 12422978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 777
Target Start/End: Complemental strand, 31902465 - 31902383
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggtt 777  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||| ||||| |||| || |  |||| |||||| |||| ||||||    
T  31902465 ttttaattcgagatcgggagtcagttctctggttcaagtttggttttgagcttatttgatgttcctttggtggaccggaggtt 31902383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 860 - 905
Target Start/End: Original strand, 2063070 - 2063115
Alignment:
Q  860 ttttgggatgtgtagtggcaatgagtggttatggatatcgtttttt 905  Q
    ||||||| || ||||||||||||  |||||||||||||||||||||    
T  2063070 ttttgggttgagtagtggcaatgtatggttatggatatcgtttttt 2063115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 684
Target Start/End: Complemental strand, 12409807 - 12409676
Alignment:
Q  556 aaatagagccatacaaattttccatgactctcttatctcacactgattctctgacgaatttgcatttacagaagtgctgcctagtagcacctat---gga 652  Q
    ||||||||||||||| |||| || |  || |||| ||| | |||||||||||   | || |||| ||| ||||||||  |||||||||||| |    |||    
T  12409807 aaatagagccatacacatttccctttgctttcttttctgaaactgattctctcctgtatctgcacttagagaagtgccacctagtagcaccaacaacgga 12409708  T
Q  653 cttctctggtttgaagaatttaagaacacttg 684  Q
    ||||||||||||||||||||| ||||| ||||    
T  12409707 cttctctggtttgaagaatttgagaactcttg 12409676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 684
Target Start/End: Complemental strand, 12421867 - 12421736
Alignment:
Q  556 aaatagagccatacaaattttccatgactctcttatctcacactgattctctgacgaatttgcatttacagaagtgctgcctagtagcacctat---gga 652  Q
    ||||||||||||||| |||| || |  || |||| ||| | |||||||||||   | || |||| ||| ||||||||  |||||||||||| |    |||    
T  12421867 aaatagagccatacacatttccctttgctttcttttctgaaactgattctctcctgtatctgcacttagagaagtgccacctagtagcaccaacaacgga 12421768  T
Q  653 cttctctggtttgaagaatttaagaacacttg 684  Q
    ||||||||||||||||||||| ||||| ||||    
T  12421767 cttctctggtttgaagaatttgagaactcttg 12421736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 695 - 947
Target Start/End: Original strand, 12296205 - 12296460
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||   |||||||||||||||||||| ||| ||||||||||||| || ||||||| ||| |||| ||||||  | ||||||| || ||    
T  12296205 ttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggcttttttggtgttctttcggtggaccggaggttgtgtggtggtggaagct 12296304  T
Q  795 gattgatcttaaa--tagtggttcaacttaggtgttgacgtatgggtggttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggttat 891  Q
    | ||| |||| |   |||||| |||||||||||| ||| |   | ||| ||||||||||||| |||| |||||||||| |||||||| ||| ||||||||    
T  12296305 ggttgttctttagagtagtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttat 12296404  T
Q  892 ggatatcgttttttagtggttgttttcgtaaaggagtct-attttaggtgatgatgt 947  Q
    ||||||||||||| |||||| |  |||| ||||||||||  ||||||||| ||||||    
T  12296405 ggatatcgtttttcagtggtcg-cttcggaaaggagtctgtttttaggtggtgatgt 12296460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 695 - 768
Target Start/End: Complemental strand, 46698836 - 46698762
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtaga 768  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||| ||||||| ||||||    
T  46698836 ttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggctgtttaggtgttctttcggtaga 46698762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 695 - 916
Target Start/End: Original strand, 28966897 - 28967121
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||||  |  ||||||| ||| | || ||||||  ||||||||| || ||    
T  28966897 ttttgattcgagattgggagtcagttctttggctcaagtttggttttgggcttttaggatgttctttcggtggtccggaggttgtgaggtggtggaagct 28966996  T
Q  795 gattgatct-ta-aatagtggttcaacttaggtgttgacgtatgg-gtggttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggtta 890  Q
    ||||||||| || |||||||| ||| |||| | |  | ||  ||| ||| |||||||| ||||  ||| ||||||| || |||||||| |||||||||||    
T  28966997 gattgatctctagaatagtggctcatcttatgggacg-cggctggagtgtttcatttaaagggaggttattttgggctgagtagtggcgatgagtggtta 28967095  T
Q  891 tggatatcgttttttagtggttgttt 916  Q
    |||||   ||||||||||||| ||||    
T  28967096 tggattatgttttttagtggtggttt 28967121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 35800519 - 35800628
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||| ||||||||||||| ||| || ||| ||||||||||||| || ||||||| ||| |||| ||||||  | ||||||| || ||    
T  35800519 ttttgattcgagatcggaagtcagttctttgattccagtttggttttgggcttttttggtgttctttcggtggaccggaggtttcgcggtggtggaacct 35800618  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  35800619 gaatgatctt 35800628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 25753202 - 25753258
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||    
T  25753202 ttttgattcgagatcgggagtcagttctttggctcaagtttgattttgggcttttta 25753258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 53823472 - 53823363
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| ||||||| |||||| |  |||||| ||| || |  ||||  |||||||||| ||  |    
T  53823472 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggttttttatggtttctttcggttgatcgaaggtcgagaggtggtggaagtt 53823373  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  53823372 gattgatctt 53823363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 695 - 750
Target Start/End: Original strand, 16501761 - 16501816
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttt 750  Q
    |||||||||||| ||||||||||| |||||||||| || ||| |||||||||||||    
T  16501761 ttttgattcgagatcgggagtcagctctttggttctagtttggttttgggcttttt 16501816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 38637283 - 38637175
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||||||||| |||||||| | ||| | | |||||||||||||| |  |||||||||| || | |||||  |||||||||| || ||    
T  38637283 ttttgattcgagatcgggagtcaattctttggcttaag-taggttttgggctttttatggtttcttttggtggatcggaggtcgagaggtggtggaagct 38637185  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  38637184 gaatgatctt 38637175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 38929857 - 38929966
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||  ||||||||||||||| ||||| ||| ||||||||||||  || ||||||| |||   || ||||||  ||||||||| ||  |    
T  38929857 ttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggcttttatggtgttctttcggtgatccggaggttgtgaggtggtggaagtt 38929956  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  38929957 gattgatctt 38929966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 751
Target Start/End: Complemental strand, 22811211 - 22811155
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||| ||||||| ||||||||||||||||||| ||||| ||| |||| |||||||||    
T  22811211 tttttattcgagatcgggagtcagttctttggctcaagtttggttttaggcttttta 22811155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 41118018 - 41117909
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||| ||| |||||||||| ||||  | | |||||||||||||| |  |||||| | | || |||||||  |||||||||| || ||    
T  41118018 ttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggctttttatggtttctttcgatggatcagaggtcgagaggtggtggaagct 41117919  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  41117918 gaatgatctt 41117909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 7e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 696 - 954
Target Start/End: Original strand, 15906717 - 15906978
Alignment:
Q  696 tttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggct-ttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||||||  |||||   ||||||  || |||||||||||||||||||||| ||  |    
T  15906717 tttgattcgagatcgggagtcagttctttggttcaagtttggttttgggctgatttagtgtttctttcagtggaccagaggttaagaggtggtggaagat 15906816  T
Q  795 gattgatct-ta-aatagtggttcaacttaggtgttgacgtatgggtggttcatttagag-ggtgttcttttgggatgtgtagtggcaatgagtggttat 891  Q
    ||||||| | || |||||| | |||||||||||| ||| |   | ||| || |||||||| |||||| |||||||||| ||||||||||   ||||||||    
T  15906817 gattgatttatagaatagtagctcaacttaggtgatgaggacagtgtgttttatttagagaggtgttattttgggatgagtagtggcaacatgtggttat 15906916  T
Q  892 ggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgtccatctc 954  Q
    |||||  |||||| |||||| | |||||| ||||  ||| |||| |||| ||||||| |||||    
T  15906917 ggatactgtttttcagtggtcg-tttcgtgaagggatctgtttttggtggtgatgtctatctc 15906978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 695 - 750
Target Start/End: Complemental strand, 30236179 - 30236124
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttt 750  Q
    |||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||    
T  30236179 ttttgattcgagatcgggagtcagttctttggttcaagtttggttttgggcttttt 30236124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 17657053 - 17656944
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| |||||| ||||||| |  |||||| ||| || | |||||  | |||||||| || ||    
T  17657053 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggactttttatggtttctttcggtggatcggaggtcgataggtggtggaagct 17656954  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  17656953 gaatgatctt 17656944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 17720756 - 17720648
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||| | ||||||||||||||||||||||||  | | ||||||||| ||| || ||||||| ||| |||  |||||| |||||||||| ||  |    
T  17720756 ttttgattcg-gatcgggagtcagttctttggttcaatttaggttttgggctgttttggtgttctttcggtggacttgaggttgagaggtggtggaagtt 17720658  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  17720657 gattgatctt 17720648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 695 - 750
Target Start/End: Complemental strand, 32945754 - 32945699
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttt 750  Q
    |||||||||||| |||||||||| ||||||| |||||| ||| |||||||||||||    
T  32945754 ttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggcttttt 32945699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 694 - 777
Target Start/End: Original strand, 35062486 - 35062569
Alignment:
Q  694 attttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggtt 777  Q
    ||||||||||||| ||| ||||||||||| | |||| || ||| |||||||||||||||| |||| || ||| || ||||||||    
T  35062486 attttgattcgagatcgagagtcagttctcttgttctagtttggttttgggctttttaggtgttccttcggtggatcagaggtt 35062569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 9519529 - 9519582
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||||    
T  9519529 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 9519582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 24995446 - 24995393
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||||    
T  24995446 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 24995393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 41893451 - 41893399
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| |||||||||||||||    
T  41893451 ttttgattcgagatcgggagtcagttctttgtctcaag-ttgtttttgggcttt 41893399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 753
Target Start/End: Original strand, 10552298 - 10552356
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttagg 753  Q
    ||||||||| || ||||||||||||||| |||||| || ||| ||||| ||||||||||    
T  10552298 ttttgattctagatcgggagtcagttctctggttctagtttggttttgtgctttttagg 10552356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 10248604 - 10248495
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    ||||||||| || ||||||||||||||||||| ||||| ||| ||||  ||||| || |  |||||||||| || | ||||    ||||||||| || ||    
T  10248604 ttttgattcaagatcgggagtcagttctttggctcaagtttggttttttgctttatatggtttcttttggtggatcggaggccgcgaggtggtggaagct 10248505  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  10248504 gattgatctt 10248495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 16457512 - 16457459
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||| ||||||    
T  16457512 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttaggcttt 16457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 37986909 - 37986856
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | ||||||| |||||    
T  37986909 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgtgcttt 37986856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 696 - 749
Target Start/End: Complemental strand, 38577840 - 38577787
Alignment:
Q  696 tttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    ||||||||||| |||||||| |||||||||||| ||| | |||||||| |||||    
T  38577840 tttgattcgagatcgggagttagttctttggtttaagttggtttttggactttt 38577787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 147 - 517
Target Start/End: Complemental strand, 24090 - 23725
Alignment:
Q  147 tgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatgg 246  Q
    |||||||||||||  |||| ||||   ||| ||||| ||||||| |||||| |||||||||||||||| |||||||||||| |   || |||| ||||||    
T  24090 tgagttgcctgatcatattatatcttgtatcttttccaagttagctttgaaggatttggtgaaaaccagtgcattgtccaaacaatggattcatgaatgg 23991  T
Q  247 cgattaagaatggacctaaacttaactttgatctccaaaacatgtttgaacttcgctataatacagttcaagagttaccgaaaagccttccactccttca 346  Q
     ||||| | ||||||||||||||      |||||| | | |||||||||      |||||| |||| |||||| |||||  ||| | |||| |||  |||    
T  23990 ggattacggatggacctaaacttc-----gatctctataccatgtttga------ctataacacagatcaagacttaccacaaatcgttcctctctctca 23902  T
Q  347 agggtttca------atctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccatta 440  Q
    | |||||||      |||| ||||||||| ||| ||||||||||| ||||| |||| | ||||||  || ||  |||| || |||||||| |||||||||    
T  23901 aaggtttcactatcaatctaaatttgccacaagtttggatcaatttatgctccattataaaggtgtcattatccgttccattcgagtaaaatttccatta 23802  T
Q  441 ggtgatgaatatagatcggtcattggtagattgatttcccaaggaatcgctaagggagccaaaagtattgaacttct 517  Q
    ||| ||||| ||||    ||||||| ||||||||| ||| ||||||| |||||||| ||||||  ||||||||||||    
T  23801 ggtaatgaacatagggatgtcattgatagattgatctccaaaggaattgctaagggtgccaaacatattgaacttct 23725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 7e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 695 - 945
Target Start/End: Complemental strand, 39184238 - 39183985
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagc--ttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaa 792  Q
    |||||||||||| |||| |||||||||||||||||||||  ||| ||||| ||||||| || ||||||| ||| |||||||||||  ||||| ||| ||     
T  39184238 ttttgattcgagatcggaagtcagttctttggttcaagcatttggttttgagcttttttggtgttctttcggtggaccagaggttgtgaggtagtggaag 39184139  T
Q  793 ctgattgatc--ttaaatagtggttcaacttaggtgttgacgtatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggtt 889  Q
    ||||||||||  || |||||||| ||| ||| |||||||| |    |||| ||| || ||| ||||||| |||||||||  |||||||| |||  |||||    
T  39184138 ctgattgatcttttgaatagtggctcagctttggtgttgaggacatggtgattcgttaagaggggtgttattttgggataagtagtggcgatg-ttggtt 39184040  T
Q  890 atggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgat 945  Q
    ||||||| ||||||| |||||| | |||||| |  |||||| ||||||||| ||||    
T  39184039 atggataccgtttttcagtggtcg-tttcgtgatagagtctgttttaggtggtgat 39183985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 269
Target Start/End: Original strand, 9663321 - 9663464
Alignment:
Q  126 gaggtctaaaaagcccaagattgagttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtcc 225  Q
    ||||| ||||||||  |||| ||||||||||||| ||||| ||||   ||| ||||  ||||||| |||||| |||||||||||||| | ||||||||||    
T  9663321 gaggtgtaaaaagcttaagagtgagttgcctgatagtattatatcttatatctttttcaagttagctttgaaggatttggtgaaaactagtgcattgtcc 9663420  T
Q  226 aagcggcggcttcaggaatggcgattaagaatggacctaaactt 269  Q
    || ||  || |||| |||||| ||||||| | |||||| |||||    
T  9663421 aaacgatgggttcacgaatggggattaaggacggacctcaactt 9663464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 13954285 - 13954176
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||||||||| | |||||| ||||| ||| |||||||||||||| |  |||||| ||| || | || ||| | |||||||| |||||    
T  13954285 ttttgattcgagatcgggagtcattactttggctcaagtttggttttgggctttttatggtttctttcggtggatcggaagttgaaaggtggtggaaact 13954186  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  13954185 gattgatctt 13954176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 441
Target Start/End: Original strand, 9663538 - 9663628
Alignment:
Q  351 tttcaatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccgagtaaattttccattag 441  Q
    |||||||||||||||| || ||||||||||||||| ||||| |||| | ||||||  || ||   ||||||||||||||| ||||||||||    
T  9663538 tttcaatctgaatttgtcacaagattggatcaatttatgctccattataaaggtgccatcatccattcaatccgagtaaaatttccattag 9663628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 748
Target Start/End: Complemental strand, 22675376 - 22675322
Alignment:
Q  694 attttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||    
T  22675376 attttgattcgagatcgggagtcagttctttggctcaagtttggttttgggcttt 22675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 822
Target Start/End: Original strand, 27713099 - 27713228
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| |||||| |||||||||||| ||||| ||| ||||||||||||  |  ||||||| ||| | | |||||||   |||||||| |||||    
T  27713099 ttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggcttttatgttgttctttcggtggtctagaggttgtcaggtggtggaaact 27713198  T
Q  795 gattgatctt--aaatagtggttcaactta 822  Q
     |||||||||   |||||||| ||||||||    
T  27713199 tattgatctttagaatagtggctcaactta 27713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 878
Target Start/End: Original strand, 8730947 - 8731134
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||| ||||||| ||||||||||||||||||||||| |  ||| ||||||||||||| || ||||||| | | ||||  ||||| |||||||||| || |    
T  8730947 ttttaattcgagatcgggagtcagttctttggttcaggttttggttttgggcttttttggtgttctttcgatggaccgaaggttcagaggtggtggaagc 8731046  T
Q  794 tgattgatctt--aaatagtggttcaacttaggtgttgacg-tatgggtggttcatttaga-gggtgttcttttgggatgtgtagtggc 878  Q
    | |||||| ||   ||||| || ||||||| |||| ||| | ||| | || |||||||||| ||||||| |||||||||| ||||||||    
T  8731047 taattgatatttagaatagcggctcaactttggtgatgaggatat-gatgtttcatttagaggggtgttattttgggatgagtagtggc 8731134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 837 - 937
Target Start/End: Complemental strand, 17853961 - 17853861
Alignment:
Q  837 ggtggttcatttagagg-gtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctatttt 935  Q
    |||| |||||||||||| || | |||||||| || |||||||  ||| ||||||||||||||||||||| |||| | | |||||||||||||||| ||||    
T  17853961 ggtgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcg-tttcgtaaaggagtctgtttt 17853863  T
Q  936 ag 937  Q
    ||    
T  17853862 ag 17853861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 916
Target Start/End: Complemental strand, 24072317 - 24072094
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||| ||| |||| |||||||||||||||||||| ||| ||| ||| ||||| || ||||||| ||| |||| |||||| | |||||||  |  ||    
T  24072317 ttttgatttgagatcggaagtcagttctttggttcaag-ttgatttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggttgatgct 24072219  T
Q  795 gattgatctt--aaatagtggttcaacttaggtgttgacgtatgggtggttcatttagagg-gtgttcttttgggatgtgtagtggcaatgagtggttat 891  Q
    || || ||||   |||||||  |||||||  |||  || | | ||||| ||||||||||||  |||| |||||||||| |||||| | ||| ||| | ||    
T  24072218 gaatggtctttagaatagtgactcaactttcgtgacgaggaaggggtgtttcatttagaggaatgttattttgggatgagtagtgacgatgggtgatcat 24072119  T
Q  892 ggatatcgttttttagtggttgttt 916  Q
     ||||||||||||||||||| ||||    
T  24072118 agatatcgttttttagtggtcgttt 24072094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 8297498 - 8297554
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| |||||| |||||||    
T  8297498 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttggacttttta 8297554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 744
Target Start/End: Complemental strand, 39024501 - 39024452
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttggg 744  Q
    |||||||||||| |||||||||| |||||||||||||| ||| |||||||    
T  39024501 ttttgattcgagatcgggagtcacttctttggttcaagtttggttttggg 39024452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Complemental strand, 7195290 - 7195236
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||||||||||| ||||| | |  |||||||||||    
T  7195290 ttttgattcgagatcgggagtcagttctttggctcaagttagagtttgggctttt 7195236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 842 - 943
Target Start/End: Original strand, 23426512 - 23426613
Alignment:
Q  842 ttcatttagagggt-gttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtg 940  Q
    |||||||||||||| ||| | | |||||| |||||||| | |||| ||||||| |||  ||||| |||||| ||||| || || ||||||||||||||||    
T  23426512 ttcatttagagggttgttatctggggatgagtagtggcgacgagtagttatgggtattatttttcagtggtcgtttt-gtgaaagagtctattttaggtg 23426610  T
Q  941 atg 943  Q
    |||    
T  23426611 atg 23426613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 851 - 905
Target Start/End: Original strand, 31742368 - 31742421
Alignment:
Q  851 agggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgtttttt 905  Q
    |||||||||||||||| || |||||||| ||| || |||||||||||||||||||    
T  31742368 agggtgttcttttggggtgagtagtggcgatgggt-gttatggatatcgtttttt 31742421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 788
Target Start/End: Complemental strand, 14302481 - 14302388
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtg 788  Q
    ||||| |||||| | |||||||||||||||||  |||| ||| |||||||||||||| |  |||||| ||| || | |||||  ||||||||||    
T  14302481 ttttggttcgagattgggagtcagttctttggagcaagtttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtggtg 14302388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 34378128 - 34378181
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||   |||| | |||||||||||||    
T  34378128 ttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggcttt 34378181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 695 - 788
Target Start/End: Original strand, 5556600 - 5556694
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtg 788  Q
    |||||||||||| |||||||||||||||||||||||||  ||| |||||||||||| ||| ||||||| ||| |||| |||||| ||||||||||    
T  5556600 ttttgattcgagatcgggagtcagttctttggttcaagttttggttttgggcttttcaggtgttctttcggtggaccggaggtttagaggtggtg 5556694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 695 - 786
Target Start/End: Complemental strand, 1652937 - 1652846
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtgg 786  Q
    |||||||||||| || ||||| |||||||||||||||| ||| ||||||||||||| || ||||||| ||| |||| ||||||||| |||||    
T  1652937 ttttgattcgagatcaggagttagttctttggttcaagtttggttttgggcttttttggtgttctttcggtggaccggaggttaagcggtgg 1652846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 699 - 788
Target Start/End: Original strand, 27398992 - 27399082
Alignment:
Q  699 gattcgagttcgggagtcagttctttggttcaagcttgtttttgggc-tttttaggcgttcttttggtagaccagaggttaagaggtggtg 788  Q
    |||||||| || |||||||||| ||||||||||| ||| |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||    
T  27398992 gattcgaggtcaggagtcagttatttggttcaagtttggttttgggctttttttggtgttcttttggtggaccagaggttgagaggtggtg 27399082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 695 - 803
Target Start/End: Complemental strand, 33144000 - 33143891
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagctt-gtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||| |  |||||| ||| || |||||||   ||||||||| || |    
T  33144000 ttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggctttttatggtttctttcggtggatcagaggtcgcgaggtggtggaagc 33143901  T
Q  794 tgattgatct 803  Q
    ||||||||||    
T  33143900 tgattgatct 33143891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Complemental strand, 823486 - 823376
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctt-tttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||||||| ||| ||||||||| |||  |||||| ||  |||||||||| ||| || ||||||| ||||||||||||||| |||||||| | || |    
T  823486 ttttgattcgagatcgagagtcagttgtttcattcaagttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagc 823387  T
Q  794 tgattgatctt 804  Q
    ||| |||||||    
T  823386 tgaatgatctt 823376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 425
Target Start/End: Complemental strand, 2223948 - 2223878
Alignment:
Q  355 aatctgaatttgccaaaagattggatcaattcatgctgcattttcaaggtgatatgattagttcaatccga 425  Q
    ||||||||||||||  |||| ||||||||||||||||||||| ||||||||| |||||   ||||||||||    
T  2223948 aatctgaatttgccgcaagagtggatcaattcatgctgcattatcaaggtgacatgatccattcaatccga 2223878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 836 - 940
Target Start/End: Complemental strand, 13018217 - 13018113
Alignment:
Q  836 gggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattt 934  Q
    ||||| || ||||||| ||| |||||||| || || |||||||||||| ||| | ||||||||| |||||||||||||||||| || | ||||||| |||    
T  13018217 gggtgtttgatttagatgggcgttcttttagggtgagtagtggcaatgggtgatcatggatatcattttttagtggttgtttt-gtgatggagtctgttt 13018119  T
Q  935 taggtg 940  Q
    ||||||    
T  13018118 taggtg 13018113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 837 - 947
Target Start/End: Original strand, 27399136 - 27399246
Alignment:
Q  837 ggtggttcatttaga-gggtgttcttttgggatgtgtagtggcaatgagtgg-ttatggatatcgttttttagtggttgttttcgtaaaggagtctattt 934  Q
    |||| |||||||||| ||||||||||||||| || |||||||||||| |||| |||| ||||||| |||| |||||| | || ||| |||||| || |||    
T  27399136 ggtgtttcatttagacgggtgttcttttgggctgagtagtggcaatgggtggtttatagatatcg-ttttcagtggtcg-ttgcgtgaaggagcctgttt 27399233  T
Q  935 taggtgatgatgt 947  Q
    |||||||||||||    
T  27399234 taggtgatgatgt 27399246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 269
Target Start/End: Complemental strand, 2224133 - 2224014
Alignment:
Q  150 gttgcctgattgtattttatcgattatattttcaaagttaggtttgaaagatttggtgaaaaccaatgcattgtccaagcggcggcttcaggaatggcga 249  Q
    ||||||||||||| || ||||   ||| |||||||||||||||||||| |||||||||||||| |   |||||||||| |   ||||||| |||||| ||    
T  2224133 gttgcctgattgtgttatatcatatatcttttcaaagttaggtttgaaggatttggtgaaaacaatcacattgtccaaactatggcttcacgaatgggga 2224034  T
Q  250 ttaagaatggacctaaactt 269  Q
    || ||  ||||||| |||||    
T  2224033 ttcagggtggacctcaactt 2224014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 749
Target Start/End: Complemental strand, 9584104 - 9584050
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||    
T  9584104 ttttgattcgagatcgggagtcagttctttgtctcaagatggtttttgggctttt 9584050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 19176532 - 19176586
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||||||||||  ||||| | ||||||||||||||    
T  19176532 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttt 19176586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 749
Target Start/End: Complemental strand, 39021327 - 39021273
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||||||||||| |||||  || ||||||||||||    
T  39021327 ttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggctttt 39021273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 47945736 - 47945790
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||||| ||||| ||||| ||| ||||||||||||    
T  47945736 ttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggctttt 47945790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 17550987 - 17551040
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||||    
T  17550987 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 17551040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 37123412 - 37123468
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||||||||||| | ||||||||||||||||| ||||  ||| ||||||||||||||    
T  37123412 ttttgattcgagattgggagtcagttctttggatcaaatttggttttgggcttttta 37123468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 708 - 777
Target Start/End: Original strand, 38488838 - 38488908
Alignment:
Q  708 tcgggagtcagttctttggttcaagcttgtttttgggcttt-ttaggcgttcttttggtagaccagaggtt 777  Q
    |||||||||||| ||||| |||||| ||| ||||||||||| ||||| ||||||| ||| |||| ||||||    
T  38488838 tcgggagtcagtgctttgtttcaagtttggttttgggctttgttaggtgttctttcggtggaccggaggtt 38488908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 749
Target Start/End: Original strand, 43012405 - 43012459
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttt 749  Q
    |||||||||||| ||||||||||||||||||  ||||| | ||||||| ||||||    
T  43012405 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgagctttt 43012459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 884 - 917
Target Start/End: Complemental strand, 823278 - 823245
Alignment:
Q  884 gtggttatggatatcgttttttagtggttgtttt 917  Q
    ||||||||||||||||||||| ||||||||||||    
T  823278 gtggttatggatatcgtttttcagtggttgtttt 823245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 20611813 - 20611866
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  | ||| | |||||||||||||    
T  20611813 ttttgattcgagatcgggagtcagttctttgacttaagttggtttttgggcttt 20611866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 695 - 904
Target Start/End: Complemental strand, 50589258 - 50589046
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||  ||||||| |||||||||||  |||| ||| |||||||||| ||  | ||||||| ||| |||||||||||  ||||||||  ||  |    
T  50589258 ttttgattcgaaatcgggagccagttctttggcccaagtttggttttgggcttatttagtgttctttcggtggaccagaggttgtgaggtggtagaagtt 50589159  T
Q  795 gattgatctt--aaatagtggttcaacttaggtgttgacgtatgggtggttcatttagagggtgtt-cttttgggatgtgtagtggcaatgagtggttat 891  Q
    ||||||||||   |||||| | |||||||||||| ||  |   | ||| ||||||||||||| |||  ||||||| || |||||||||||| | ||||||    
T  50589158 gattgatctttggaatagtagctcaacttaggtgatgcagacggagtgtttcatttagagggggttatttttgggttgagtagtggcaatgggaggttat 50589059  T
Q  892 ggatatcgttttt 904  Q
    |||||||||||||    
T  50589058 ggatatcgttttt 50589046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 27102221 - 27102330
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||| |  |||||| ||| || | |||||  |||||||||| || ||    
T  27102221 ttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtggtggaagct 27102320  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  27102321 gaatgatctt 27102330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 806 - 947
Target Start/End: Original strand, 49820276 - 49820416
Alignment:
Q  806 aatagtggttcaacttaggtgttgacgtatgggtggttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttt 904  Q
    |||||||| ||| |||| ||| |||||||  |||| ||||||||||||| || | ||||||||||||| ||||| | | |||||||||||||||||||||    
T  49820276 aatagtggctcatcttaagtgatgacgtagaggtgtttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgttttt 49820375  T
Q  905 tagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
     |||| | | |||| | ||||||||| ||||||||| ||||||    
T  49820376 cagtgctcg-tttcat-aaggagtcttttttaggtggtgatgt 49820416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 852 - 947
Target Start/End: Original strand, 16577465 - 16577561
Alignment:
Q  852 gggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgtttttt-agtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    ||||||||||||||  || |||| | | |||| |||||||||||||| |||||| |||||| |||||||| || |||||| ||||||||||||||||    
T  16577465 gggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtctgttttaggtgatgatgt 16577561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 695 - 826
Target Start/End: Original strand, 42374193 - 42374327
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagctt-gtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaac 793  Q
    |||||||| ||| ||||||||||||  ||||||||||| || | |||||||||| || |||||||||| || | ||| ||| || |||||||||| || |    
T  42374193 ttttgatttgagatcgggagtcagtcttttggttcaagttttggttttgggcttgtttggcgttctttcggcataccggagattgagaggtggtggaagc 42374292  T
Q  794 tgattgatctt--aaatagtggttcaacttaggtg 826  Q
    |||||||||||   |||||||| ||||||| ||||    
T  42374293 tgattgatctttagaatagtggctcaactttggtg 42374327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 5389472 - 5389419
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| |||||||||||||||    
T  5389472 ttttgattcgagatcgggagtcagttctttgactcaagtttgtttttgggcttt 5389419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 693 - 751
Target Start/End: Complemental strand, 10785512 - 10785454
Alignment:
Q  693 aattttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    ||||||| |||||| ||||||||||||| ||||| ||||| ||| ||||||||||||||    
T  10785512 aattttgcttcgagatcgggagtcagttgtttggctcaagtttggttttgggcttttta 10785454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 4651810 - 4651918
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||||||||||| ||| |||||| || ||| ||||||||||||| || |||| || ||| |||| ||||||  | ||||||| || ||    
T  4651810 ttttgattcgagatcgggagtcag-tctctggttctagtttggttttgggcttttttggtgttccttcggtggaccggaggttgcgcggtggtggaagct 4651908  T
Q  795 gattgatctt 804  Q
    || |||||||    
T  4651909 gaatgatctt 4651918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 804
Target Start/End: Original strand, 19598666 - 19598775
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggctttttaggcgttcttttggtagaccagaggttaagaggtggtgaaaact 794  Q
    |||||||||||| ||| ||||||||||||||  ||||| ||| ||||||| ||||  || ||||||| ||| | || ||||||  ||||||||| ||  |    
T  19598666 ttttgattcgagatcgagagtcagttctttgactcaagtttgattttgggtttttatggtgttctttcggtggtccggaggttgtgaggtggtggaagtt 19598765  T
Q  795 gattgatctt 804  Q
    ||||||||||    
T  19598766 gattgatctt 19598775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 31585811 - 31585758
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||||    
T  31585811 ttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggcttt 31585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 748
Target Start/End: Complemental strand, 46692870 - 46692817
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| |||||||| |||||||||| ||||| | |||||||||||||    
T  46692870 ttttgattcgagatcgggagttagttctttggctcaagttggtttttgggcttt 46692817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 750
Target Start/End: Original strand, 17033616 - 17033672
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaag-cttgtttttgggcttttt 750  Q
    |||||| ||||| |||||||||||||||||||||||||  ||| |||||||||||||    
T  17033616 ttttgaatcgagatcgggagtcagttctttggttcaagttttggttttgggcttttt 17033672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 836 - 903
Target Start/End: Complemental strand, 38544646 - 38544578
Alignment:
Q  836 gggtggttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggttatggatatcgtttt 903  Q
    ||||| ||||||||||||| ||||   |||||||| |||||| | ||||||||||||||||||||||||    
T  38544646 gggtgtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgtttt 38544578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 852 - 947
Target Start/End: Complemental strand, 38548950 - 38548856
Alignment:
Q  852 gggtgttcttttgggatgtgtagtggcaatgagtggttatggatatcgttttttagtggttgttttcgtaaaggagtctattttaggtgatgatgt 947  Q
    |||||||  ||||||||| |||||| | ||| ||||||||| ||||||||||| |||| | | |||||| || |||||| ||||||||| ||||||    
T  38548950 gggtgttactttgggatgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcg-tttcgtgaaagagtctgttttaggtggtgatgt 38548856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 692 - 750
Target Start/End: Original strand, 16147582 - 16147640
Alignment:
Q  692 gaattttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttt 750  Q
    |||||||||||| |  ||||||||||||||||||| ||||| ||| |||||| ||||||    
T  16147582 gaattttgattcaatatcgggagtcagttctttgggtcaagtttgattttggacttttt 16147640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 24658959 - 24659012
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||| ||||||| | ||| | |||||||||||||    
T  24658959 ttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggcttt 24659012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 728
Target Start/End: Complemental strand, 38544789 - 38544756
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggtt 728  Q
    |||||||||||| |||||||||||||||||||||    
T  38544789 ttttgattcgagatcgggagtcagttctttggtt 38544756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 748
Target Start/End: Original strand, 41920482 - 41920535
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttt 748  Q
    |||||||||||| ||||||||||||||||||  ||||| | | |||||||||||    
T  41920482 ttttgattcgagatcgggagtcagttctttgactcaagttggattttgggcttt 41920535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 695 - 751
Target Start/End: Original strand, 19413 - 19469
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
    |||||||||||| |||| |||||||||||||| ||||| ||| ||||||||||||||    
T  19413 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggcttttta 19469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 836 - 903
Target Start/End: Complemental strand, 925 - 857
Alignment:
Q  836 gggtggttcatttagaggg-tgttcttttgggatgtgtagtggcaatgagtggttatggatatcgtttt 903  Q
    ||||| ||||||||||||| ||||   |||||||| |||||| | ||||||||||||||||||||||||    
T  925 gggtgtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgtttt 857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 728
Target Start/End: Complemental strand, 1068 - 1035
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggtt 728  Q
    |||||||||||| |||||||||||||||||||||    
T  1068 ttttgattcgagatcgggagtcagttctttggtt 1035  T

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Target: scaffold0119 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 695 - 751
Target Start/End: Complemental strand, 42189 - 42133
Alignment:
Q  695 ttttgattcgagttcgggagtcagttctttggttcaagcttgtttttgggcttttta 751  Q
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T  42189 ttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggattttta 42133  T

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