View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_3 (Length: 919)
Name: NF13716_low_3
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 696; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 1 - 728
Target Start/End: Complemental strand, 11556685 - 11555958
Alignment:
| Q |
1 |
tattaatagtgtatgttatatgttagtttccttcattaaagaaaccaaggggccctgcttgatgttgctcgcggtgggaggagagtgataatgtgtgggg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
11556685 |
tattaatagtgtatgttatatgttagtttccttcattaaagaaaccaaggggccctgcttgatgttgctcgcggtggggggagaatgataatgtgtgggg |
11556586 |
T |
|
| Q |
101 |
ttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatacaaggtgttggaaggtttgtccatgaaaagtgttagcttttgcatggaaacttct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556585 |
ttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatacaaggtgttggaaggtttgtccatgaaaagtgttagcttttgcatggaaacttct |
11556486 |
T |
|
| Q |
201 |
tagtcgtattccaactaaaggtaatctagtgttgtgtcatgctctactgttggattcttctacagattgtgtgttttgtgccggttgggcagaaacttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556485 |
tagtcgtattccaactaaaggtaatctagtgttgtgtcatgctctacagttggattcttctacagattgtgtgttttgtgccggttgggcagaaacttca |
11556386 |
T |
|
| Q |
301 |
tggtcttattccaactaaagataatctatttttacattgttaagtttcttataaggtgtggtctaatgtgcttaaattactcaataaaatctgctttcgc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11556385 |
tggtcttattccaactaaagataatctatttttacattgttaagtttcttataaggtgtggtctaatgtgcttaaattactcaataaaatctgcttttgc |
11556286 |
T |
|
| Q |
401 |
agtaggaaattgtgtaggtattggattatttggcagctattatttaggttatgtggaagtcaaaaaatgagattatttttgaaagcatgtccaacgatgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556285 |
agtaggaaattgtgtaggtattggattatttggcagctattatttaggttatgtggaagtcaaaaaatgagattatttttgaaagcatgtccaacgatgt |
11556186 |
T |
|
| Q |
501 |
tagtttgtgttactgttgattttggtgtttggtccccaactaagggttgtgtttcggtttggtgttgtaggagtttatcgtgttttattgctgtctcgat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11556185 |
tagtttgtgttactgttgattttggtgtttgatccccaactaagggttgtgtttcggtttggtgttgtaggagtttgtcgtgttttattgctgtctcgat |
11556086 |
T |
|
| Q |
601 |
taaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagct |
700 |
Q |
| |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11556085 |
taaatcgtcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagct |
11555986 |
T |
|
| Q |
701 |
gcgtctatggtgttttatttctgtctga |
728 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
11555985 |
gcgtctatggtgttttatttctgtctga |
11555958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 501 - 728
Target Start/End: Complemental strand, 11530688 - 11530461
Alignment:
| Q |
501 |
tagtttgtgttactgttgattttggtgtttggtccccaactaagggttgtgtttcggtttggtgttgtaggagtttatcgtgttttattgctgtctcgat |
600 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11530688 |
tagtttgtgttattgttgattttggtgtttggtccccaactaagggttgtgtttcggtttggtgttgtaggagtttgtcgtgttttattgctgtctcgat |
11530589 |
T |
|
| Q |
601 |
taaatcctcatacaaggtgttggaatgtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagct |
700 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11530588 |
taaatcctcatacaaggtgttggaaagtttgttggttttggatgcgaggaggagtgtattggaggaaaaaatgttccggaatttatcgaaaagcctagct |
11530489 |
T |
|
| Q |
701 |
gcgtctatggtgttttatttctgtctga |
728 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
11530488 |
gcgtctatggtgttttatttctgtctga |
11530461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 261 - 504
Target Start/End: Complemental strand, 11530964 - 11530721
Alignment:
| Q |
261 |
tacagattgtgtgttttgtgccggttgggcagaaacttcatggtcttattccaactaaagataatctatttttacattgttaagtttcttataaggtgtg |
360 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11530964 |
tacagattgtgtgttttgtgccggtcgggaggaaacttcatggtcttattccaactaaaggtaatctatttttacattgttaagtttcttataaggtgtg |
11530865 |
T |
|
| Q |
361 |
gtctaatgtgcttaaattactcaataaaatctgctttcgcagtaggaaattgtgtaggtattggattatttggcagctattatttaggttatgtggaagt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
11530864 |
gtctaatgtgcttaaattactcaataaaatctgcttttgcagtaggaaattctgtaggtactggattatttggcagctgttatttaggttatgtggaagt |
11530765 |
T |
|
| Q |
461 |
caaaaaatgagattatttttgaaagcatgtccaacgatgttagt |
504 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11530764 |
caaaaaatgagattatttttgaaagcatgtccaacgatgttagt |
11530721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 11531188 - 11530963
Alignment:
| Q |
5 |
aatagtgtatgttatatgttagtttccttcattaaagaaaccaaggggccctgcttgatgttgctcgcggtgggaggagagtgataa-------tgtgtg |
97 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||| | |||||| |
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| T |
11531188 |
aatagtgtatgttatatgttagtttccttcattaaagaatccaagggggcctgcttgatgttgctcgcggtggggggagagtgatgactgatgatgtgtg |
11531089 |
T |
|
| Q |
98 |
gggttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatacaaggtgttggaaggtttgtccatgaaaagtgttagcttttgcatggaaact |
197 |
Q |
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| T |
11531088 |
gggttggcattcgaaatgtggtggtgatatctcgattaaatcgtcatataaggtgttggaaggtttgtccatgaaaagtgttagcttttgcatggaaact |
11530989 |
T |
|
| Q |
198 |
tcttagtcgtattccaactaaaggta |
223 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
11530988 |
tcttagtcgtattccaactaaaggta |
11530963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 812 - 907
Target Start/End: Complemental strand, 11555891 - 11555796
Alignment:
| Q |
812 |
caagtgactgtaaattatggtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcttctc |
907 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11555891 |
caagtgactgtaaattatagtactatcataacttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctc |
11555796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 844 - 907
Target Start/End: Complemental strand, 11530213 - 11530150
Alignment:
| Q |
844 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatttaaatttcattgttcttctc |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11530213 |
ttactaaccttttcatttcccaagcatcctttcgatatgtgatgtaaatttcattgttcttctc |
11530150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 11530595 - 11530557
Alignment:
| Q |
127 |
tctcgattaaatcgtcatacaaggtgttggaaggtttgt |
165 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
11530595 |
tctcgattaaatcctcatacaaggtgttggaaagtttgt |
11530557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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