View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_5 (Length: 593)
Name: NF13716_low_5
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 111 - 575
Target Start/End: Complemental strand, 24453833 - 24453362
Alignment:
| Q |
111 |
ctccctaacacttcccaaaggttcaaccaaacccgcagaaagccttcgaaaaatttgttgaagcgccgggtcttcaatccacctatccaaccaaaataaa |
210 |
Q |
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| T |
24453833 |
ctccctaacacttcccaaaggttcaaccaaacccgcagaaagccttcgaaaaatttgttgaagcgccgggtctccaatccacctatccaaccaaaataaa |
24453734 |
T |
|
| Q |
211 |
gtttacgaaacatactaatcaaatagctccatgtcgaagctttcccctagtttcaaatatccagggnnnnnnngtgaaagaatacagcacaaaatccacc |
310 |
Q |
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| T |
24453733 |
gtttacgaaacatactaatcaaatagctccatgtcgaagctttcccctagtttcaaacatccagggaaaaaaagtgaaataatacaacacaaaatccacc |
24453634 |
T |
|
| Q |
311 |
atcatgtttcttaaataataacccccca-------aacttacacaaggagacatacattataaagatattattaggtcatggacaaacttgcatcaannn |
403 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453633 |
atcatgtttcttaaataataaccccccaccccccaaacttacacaaggggacatacattataaagatattattaggtcatggacaaacttgcatcaattt |
24453534 |
T |
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| Q |
404 |
nnnnaaaatgacaaatctttcttttttatacaagcattgcagatctaattatatattaaaaagaaggcagaaaaataaagagtatcagaagtactcaaca |
503 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
24453533 |
ttttaaaatgacaaatctttcttttttatacaagcattgcaaatctaattatatattaaaaagaaggcagaagaataaagagtatcagaagtacgcaaca |
24453434 |
T |
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| Q |
504 |
aagtagcttacaggaaataaattgatacacagacaactcatctagattaatccttaaacaaatgcaccgctc |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453433 |
aagtagcttacaggaaataaattgatacacagacaactcatctagattaatccttaaacaaatgcaccgctc |
24453362 |
T |
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