View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_6 (Length: 491)
Name: NF13716_low_6
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Original strand, 43986900 - 43987382
Alignment:
| Q |
1 |
tgaggttggaaattggatatagtttgtgaaagattgattagagaagtgatgagtgttgtgggagatatgttttcgcaagggtgaaccgccgggaatgata |
100 |
Q |
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| T |
43986900 |
tgaggttggaaattggatatagtttgtgaaagattgattagagaagtgatgagtgttgtgggagatatgttttcgcaagggtgaaccgccgggaatgata |
43986999 |
T |
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| Q |
101 |
ggatacggcgatccctttgattagtaagatgagaactagtcattatttaattgaaacaaacaaattcataataatacactatactatagttgttttgttt |
200 |
Q |
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| T |
43987000 |
ggatacggcgatccctttgattagtaagatgagtactagtcattattgaattgaaacaaacaaattcataatataataatacactatagttgttttgttt |
43987099 |
T |
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| Q |
201 |
tgagttgagttgaatttggatagtgtaaggtaaggttatattataggaggaagagaaggacatgagcgtgtgttgttgctgactgtggaatatagtggac |
300 |
Q |
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| T |
43987100 |
tgagttgagttgaacttggatagtgtaaggtaaggttatattat---aggaagagaaggacatgagcgtgtgttgttgctgactgtggaatatagtggac |
43987196 |
T |
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| Q |
301 |
acgtgttaagatatttggttgactaggatttagaggaaatgagtaggaactggggaagattcgttatggacacgtggaggattacggttgctgtaactaa |
400 |
Q |
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| T |
43987197 |
acgtgttaagatatttggttgactaggatttagaggaaatgagtaggaactggggaagattcgttatggacacgtggaggattacggttgctgtaactaa |
43987296 |
T |
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| Q |
401 |
atttatttatctgtttttgtggatttgtaaatgtaattggg----ggaaggaaggaggagtgaggaaaagatttgaaatgatgatg |
482 |
Q |
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| T |
43987297 |
atttatttatctgtttttgtggatttgtaaatgtaattgggggaaggaaggaaggaggagtgaggaaaagatttgaaatgatgatg |
43987382 |
T |
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