View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13716_low_9 (Length: 392)
Name: NF13716_low_9
Description: NF13716
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13716_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 27 - 382
Target Start/End: Original strand, 17444910 - 17445269
Alignment:
| Q |
27 |
tatcgtaccaaaatttatgtatcatgcaatatattgttttaggaaagaacaacatttacaaaaagaaaaatattagaacatattttataaggctataata |
126 |
Q |
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| T |
17444910 |
tatcgtaccaaaatttatgtatcatgcaatatattgttttaggaaagaacaacatttacaaaaagaaaaatattagaacatattttataaggctataata |
17445009 |
T |
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| Q |
127 |
ccggaatatcttatc----aagtgccnnnnnnnncatgatgaaattatcaagtgcccttaatgaaataatttcatatagatacaattatggcatcgagaa |
222 |
Q |
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| T |
17445010 |
ccgtaatatcttatctatcaagtgccctttttttcataatgaaattatcaagtgcccttaatgaaataatttcatatagatacaattatggtatcgagaa |
17445109 |
T |
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| Q |
223 |
ctttaaaattgctttgtttttcttctctggagtagtgtccttcaattcaactttatattattaggttgtgatctaggagaaagttgctttctgatgaaga |
322 |
Q |
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| T |
17445110 |
ctttaaaattgctttgtttttcttctctggagtagtgtccttcaattccactttatattattaggttgtgatctaggagaaagttgctttatgataaaga |
17445209 |
T |
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| Q |
323 |
acaaaatacatgcactctaacataagaaaatgcaaaaataaaatcattgagtaagaataa |
382 |
Q |
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| T |
17445210 |
acaaaatacatgcactctaacataagaaaatgcaaaaataaaatcattgagtaagaataa |
17445269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 35 - 382
Target Start/End: Original strand, 22309100 - 22309451
Alignment:
| Q |
35 |
caaaatttatgtatcatgcaatatattgttttaggaaagaacaacatttacaaaaagaaaaatattagaacatattttataaggctataataccggaata |
134 |
Q |
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| T |
22309100 |
caaaatttatgtatcatgcaatatattgttttagtaaagaacaacatttacaaaaagaaaaagattagaacatattttataaggctataaaaccgtaata |
22309199 |
T |
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| Q |
135 |
tcttatcaagtgccnnnnnnnncatgatgaaattatcaagtgcccttaatgaaataatttcatatagatacaattatggcatcgagaactttaaaattgc |
234 |
Q |
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|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||| |
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| T |
22309200 |
tcttatcaagtgccctttttt-catgatgaaatgatcaagtgtccttaatgaaataatttcatatagagacaattaaggcatcaagaactttgaaattgc |
22309298 |
T |
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| Q |
235 |
tttgtttttcttctctggagtagtgtccttcaattcaacttta----tattattaggttgtgatctaggagaaagttgctttctgatgaagaac-aaaat |
329 |
Q |
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|||||||| ||||| ||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||| |||| |||| | ||| ||||| |
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| T |
22309299 |
tttgttttgcttctatggagtagtgtccttcaattccacgttatatttattattaggttgtgatctaggagaaagttactttatgatacataacaaaaat |
22309398 |
T |
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| Q |
330 |
acatgcactctaacataagaaaatgcaaaaataaaatcattgagtaagaataa |
382 |
Q |
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| | ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22309399 |
atacgcactctaacataagaaaatgcaaaaatataatcattgagtaagaataa |
22309451 |
T |
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