View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13717_high_1 (Length: 508)
Name: NF13717_high_1
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 302
Target Start/End: Complemental strand, 7153644 - 7153343
Alignment:
| Q |
9 |
agcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7153644 |
agcagagatactggaaccaatgtgtgtatttgtgtgtatgagtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaag |
7153545 |
T |
|
| Q |
109 |
tggtcatagatctcatcttcagaaaattgaaatgttagat----tttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgt-- |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7153544 |
tggtcatagatctcatcttcagaaaattgaaatgttagatttaatttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgtat |
7153445 |
T |
|
| Q |
203 |
--actagagtcaatataagtcataaatctctgcttattactaattctacaagtatttatccaagaaatagaatgtatattgtgagactcatgagtatcca |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7153444 |
aaactatagtcaatataagtcataaatctctgcttattactaactctacaagtatttatccaagaaatagaatgtatcttgtgagactcatgagtatcca |
7153345 |
T |
|
| Q |
301 |
ac |
302 |
Q |
| |
|
|| |
|
|
| T |
7153344 |
ac |
7153343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 350 - 491
Target Start/End: Complemental strand, 7153342 - 7153202
Alignment:
| Q |
350 |
tatatatctctagataacttaacaagtttccaaagatgaatcttccacaaagcctatttatcatatgataaattcgtttcatacaaaagacaaaaaggta |
449 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7153342 |
tatatatctctagatagcttaacaagtttccaa-gatgaatcttctacaaagtctatttatcatatgataaattcgtttcatacaaaagacaaaaaggta |
7153244 |
T |
|
| Q |
450 |
aggtaaataggaacccctagtcaaacacccttagaagctaaa |
491 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7153243 |
aggtaaataggatcccctagtcaaacacccttagaagctaaa |
7153202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 7159729 - 7159548
Alignment:
| Q |
20 |
tggaaccaatgtgtgtatttgtgtgtatg--agtacacatttaatgtataagaaacatgtgtgtttgctttttaattagaataatataaagtggtcatag |
117 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||||||| |||||||| ||||||| || |||||| ||||||||||| | |||||||| | |
|
|
| T |
7159729 |
tggaaccaatatgtgtaattgtgtgtatattagtacacatttaatatataagaagcatgtgt--ttccttttt---tagaataatatgaggtggtcatgg |
7159635 |
T |
|
| Q |
118 |
atctcatcttcagaaaattgaaatgtt---agattttgttgaaggtgttatgagagctatatggttgctttgtgtttggttgtattgta |
203 |
Q |
| |
|
|||| | ||||| ||||| ||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||| |
|
|
| T |
7159634 |
atctaaccttcatcaaattcaaatgttcttagattttgttgaaggtgttatgagagc--tatgatcgctttgtgtttggttgtcttgta |
7159548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University