View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_high_4 (Length: 459)
Name: NF13717_high_4
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 4586634 - 4586952
Alignment:
| Q |
15 |
tggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcgagaacaataagcttcttcttcttcttcaaacttccaattgat |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586634 |
tggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttcttcttcaaacttccaattgat |
4586733 |
T |
|
| Q |
115 |
aatatttcagttgaagaacggcacaaattgttttcctcttcttcttttttatccgtaactgataattctgttataatttcttcagccatagt-ctttttt |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
4586734 |
aatatttcagttgaagaactgcacaaattgttttcctcttcttcttttttatccgtaactgataattctgttataatttcttcagcaatagtattttttt |
4586833 |
T |
|
| Q |
214 |
ctacccttgctacactaaaaaccattttcttcctcttatctatctatatcaaaatcaattctgttaacatgaacatcataataatcacatcatacataaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4586834 |
ctacccttgctacactaaaaaccattttcttcctcttatctatctatatcaaaatcaattctgttaacatgaacatcataataatcacatcatacataaa |
4586933 |
T |
|
| Q |
314 |
tcaaaatagaacatgtcta |
332 |
Q |
| |
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||||||||||||| ||||| |
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|
| T |
4586934 |
tcaaaatagaacaagtcta |
4586952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 4593557 - 4593822
Alignment:
| Q |
15 |
tggtttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcgagaacaataagcttcttcttcttcttcaaacttccaattgat |
114 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |
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| T |
4593557 |
tggtttaacatgccttggaggtggaaaaacaatatcagcaagaagtccatttaaatcaagaacaataag---cttcttcttcttcaaaaatccaattgat |
4593653 |
T |
|
| Q |
115 |
aatatttcagttgaagaacggcacaaattgttttcctcttcttcttttttatccgtaactgataattctgttataatttcttcagccatagtcttttttc |
214 |
Q |
| |
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||||||||| |||| ||| |||||||| |||||| |||||||||| ||| ||||| ||||||| |||||||||||||||||| ||||| | |
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| T |
4593654 |
aatatttcaattgatgaaatacacaaattattttcc---tcttctttttcatcagtaaccgataattttgttataatttcttcagcaatagtat------ |
4593744 |
T |
|
| Q |
215 |
tacccttgctacactaaaaaccattttcttcctcttatctatctatatcaaaatcaattctgttaacatgaacatcataataatca |
300 |
Q |
| |
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|| ||| ||||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
4593745 |
--------cttcaccaaaaaccatgttcttccttttatctatctatgtcaaaatcaattctgtaaacatgaacatcataataatca |
4593822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 328 - 445
Target Start/End: Original strand, 4586998 - 4587116
Alignment:
| Q |
328 |
gtctaaaaagtgtgtgataaaaacaagagcaagaacatgaatactaataaaa-agacaaagaaaacagaattgaagaaatttgaatgtaacatacctgaa |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4586998 |
gtctaaaaagtgtgtgataaaaacaagagcaagaacatgaatactaataaaaaagacaaagaaaacagaattgaagaaatttgaatgtaacatacctgaa |
4587097 |
T |
|
| Q |
427 |
gaagtgtttgagttttctg |
445 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
4587098 |
gaagtgtttgagttttctg |
4587116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 88 - 258
Target Start/End: Original strand, 4537843 - 4538014
Alignment:
| Q |
88 |
ttcttcttcttcaaacttccaattgataatatttcagttgaagaacggcacaaattgttttcctcttcttcttttttatccgtaactgataattctgtta |
187 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
4537843 |
ttctttttcttcaaacttccaattgataatacttcagttgaagaaatacacaaattattttcctcttcttcttttttatcaataacagataattctgtta |
4537942 |
T |
|
| Q |
188 |
taatttcttcagccatagtct-tttttctacccttgctacactaaaaaccattttcttcctcttatctatct |
258 |
Q |
| |
|
||||||||||||| ||||| | || ||||||| | |||||| | ||||||||||||||||||||||||||| |
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|
| T |
4537943 |
taatttcttcagcaatagtatcttcttctaccttaactacaccataaaccattttcttcctcttatctatct |
4538014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 4537833 - 4537713
Alignment:
| Q |
139 |
aaattgttttcctcttcttcttttttatccgtaactgataattctgttataatttcttcagccatagtct-tttttctacccttgctacactaaaaacca |
237 |
Q |
| |
|
||||| |||| |||||||||||||||||| | || || ||||||| |||||||||||||||| ||||| | |||||||||| || ||||||||||||||| |
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|
| T |
4537833 |
aaattatttttctcttcttcttttttatcaggaattggtaattcttttataatttcttcagcaatagtatctttttctacctttactacactaaaaacca |
4537734 |
T |
|
| Q |
238 |
ttttcttcctcttatctatct |
258 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
4537733 |
ttttcttcctcttatctatct |
4537713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 329 - 441
Target Start/End: Original strand, 4593907 - 4594020
Alignment:
| Q |
329 |
tctaaaaagtgtgtgataaaaacaagagcaagaacatgaatactaat-aaaaagacaaagaaaacagaattgaagaaatttgaatgtaacatacctgaag |
427 |
Q |
| |
|
||||| ||||| ||||||| ||||||||||| | ||||| |||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
4593907 |
tctaacaagtgcgtgataagaacaagagcaaaagcatgagaactaatcaaaaagagaaagaaaacagaatttaaggaatttgaatgtaacatacctgaag |
4594006 |
T |
|
| Q |
428 |
aagtgtttgagttt |
441 |
Q |
| |
|
|||||||||||||| |
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|
| T |
4594007 |
aagtgtttgagttt |
4594020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 295
Target Start/End: Original strand, 4575913 - 4576160
Alignment:
| Q |
28 |
tttggaggtggataaacaatatcagcaagaagtccatttaaatcgagaacaataagcttcttcttcttcttcaaacttccaattgataatatttcagttg |
127 |
Q |
| |
|
|||||| ||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| | || |
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|
| T |
4575913 |
tttggatgtgaagaaacaatatcagcaagaagtccatttaaatcaagaacaataagcttcttcttcttc---aaaaatccaattgatgaaata------- |
4576002 |
T |
|
| Q |
128 |
aagaacggcacaaattgttttcctcttcttcttttttatccgtaactgataattctgttataatttcttcagccatagtcttttttctacccttgctaca |
227 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||| ||||| | ||||| ||||||||||||||||| |||| | | ||||||| || ||||| |
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|
| T |
4576003 |
--------cacaaattattttcctcttcatctttttcatcagtaacaggtaattttgttataatttcttcagtaatag--tatcttctacctttactaca |
4576092 |
T |
|
| Q |
228 |
ctaaaaaccattttcttcctcttatctatctatatcaaaatcaattctgttaacatgaacatcataat |
295 |
Q |
| |
|
| || |||||||||||| || |||||||||||| ||| | |||||||| ||||||||||||||||| |
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|
| T |
4576093 |
ccaacaaccattttctttcttttatctatctatgtcaccttgaattctgtaaacatgaacatcataat |
4576160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 329 - 444
Target Start/End: Original strand, 4538101 - 4538216
Alignment:
| Q |
329 |
tctaaaaagtgtgtgataaaaacaagagcaagaacatgaatactaataaaaaga-caaagaaaacagaattgaagaaatttgaatgtaacatacctgaag |
427 |
Q |
| |
|
||||| |||||||||||| || |||||||| ||||| | |||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
4538101 |
tctaacaagtgtgtgatacgaataagagcaaaaacattagtactaataaaaaaaacaaagaaaacataattgaagaaatttgaatgtaacata-ctgaag |
4538199 |
T |
|
| Q |
428 |
aagtgtttgagttttct |
444 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
4538200 |
aagcgtttgagttttct |
4538216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 4601977 - 4602245
Alignment:
| Q |
18 |
tttaacatggtttggaggtggataaacaatatcagcaagaagtccatttaaatcgagaacaataagcttcttcttcttcttcaaacttccaattgataat |
117 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||| ||| ||||| |||||| |||||||| || | |
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|
| T |
4601977 |
tttaacattctttggaggtggagaaacaatgtcagcaacaagtccatttaaatcaagaacaataag---ctttttcttgctcaaacatccaattggtatt |
4602073 |
T |
|
| Q |
118 |
atttcagttgaagaacggcacaaattgttttcctcttcttctttttt---atccgtaactgataattctgttataatttcttcagccatagtcttttttc |
214 |
Q |
| |
|
| | |||||| ||||| |||||||| ||||||||||| |||| |||||||||||| |||||| ||||||| ||| |||| | | || |
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|
| T |
4602074 |
tccactgaagaagaaatacacaagactttttcctcctcttcttttttttcatccttaactgataattttgttatcatttcttgagcaatag--tatcctc |
4602171 |
T |
|
| Q |
215 |
tacccttgctacactaaaaaccattttcttcctcttatctatctatatcaaaatcaattctgttaacatgaacatcata |
293 |
Q |
| |
|
|| | ||||| || |||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
4602172 |
taactttgcttcatcaaaaaccattttcttccttttatctat-----gcaaaatcaattctgtaaacatgaacatcata |
4602245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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