View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13717_high_9 (Length: 374)

Name: NF13717_high_9
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13717_high_9
NF13717_high_9
[»] chr8 (2 HSPs)
chr8 (1-359)||(38731435-38731776)
chr8 (300-349)||(35287742-35287791)
[»] scaffold0172 (1 HSPs)
scaffold0172 (297-349)||(15778-15830)
[»] chr2 (3 HSPs)
chr2 (126-180)||(14695213-14695267)
chr2 (298-353)||(13803519-13803574)
chr2 (297-349)||(19016054-19016106)
[»] chr3 (2 HSPs)
chr3 (264-303)||(24405020-24405059)
chr3 (94-162)||(51537804-51537872)
[»] chr7 (2 HSPs)
chr7 (202-303)||(10623269-10623370)
chr7 (297-349)||(18363719-18363771)
[»] scaffold0063 (1 HSPs)
scaffold0063 (297-353)||(35386-35442)
[»] chr4 (1 HSPs)
chr4 (128-168)||(18403002-18403042)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 38731435 - 38731776
Alignment:
Q  1 catataaactatgtttttgaaacactataatatatagtattgtttcaataaagaattataaattttagttgtcttgtgtgatattccacaaaatttgtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||            
T  38731435 catataaactatgtttttgaaacactataatatatagtattgtttcaataaaaaattataaattttagttctcttgtgtgatattccacaaa-------- 38731526  T
Q  101 ttgttttatgggtttccgacgacggtattgttgttcgatatgagattaagtgatttagacttgtactcgttttgtagtggctcgatatgagattaaacga 200  Q
             |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38731527 ---------gggtgtccgacgacggtattgttgttcgatatgagattaagtgatttagatttgtactcgttttgtagtggctcgatatgagattaaacga 38731617  T
Q  201 tttagacttgtacttattttgtagtagttgcatgcttgtgactcaaaaatttgaaaaggttaggttttgttaacacgaaaaggtttggttattaacgtat 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38731618 tttagacttgtactcattttgtagtagttgcatgcttgtgactcaaaaatttgaaaaggttaggttttgttaacacgaaaaggtttggttattaacgtat 38731717  T
Q  301 tggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgattatcttcagta 359  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  38731718 tggcttgagatttaggagtatgcttctcctcaaggtatcaagttcgattatcttcagta 38731776  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 35287742 - 35287791
Alignment:
Q  300 ttggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 349  Q
    |||||||||||||| ||||| ||||| |||||||||||||| ||| ||||    
T  35287742 ttggcttgagattttggagtgtgctcctcctcaaggtatcatgttcgatt 35287791  T

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Target: scaffold0172 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 15830 - 15778
Alignment:
Q  297 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 349  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||    
T  15830 gtattggcttgggattttggagtatgctcctcctcaaggtctcaagtttgatt 15778  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 14695267 - 14695213
Alignment:
Q  126 tattgttgttcgatatgagattaagtgatttagacttgtactcgttttgtagtgg 180  Q
    ||||||||||||||| ||||||  ||||||||||||||||||| ||||| |||||    
T  14695267 tattgttgttcgatacgagatttggtgatttagacttgtactcattttgcagtgg 14695213  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 13803519 - 13803574
Alignment:
Q  298 tattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgattatct 353  Q
    ||||||||||||| |||||||| ||||| |||||||||| ||| ||| ||||||||    
T  13803519 tattggcttgagacttaggagtgtgctcctcctcaaggtctcaggttcgattatct 13803574  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 19016054 - 19016106
Alignment:
Q  297 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 349  Q
    |||||||||||||| || ||||| ||||| ||||| |||| ||||||||||||    
T  19016054 gtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgatt 19016106  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 24405020 - 24405059
Alignment:
Q  264 gttttgttaacacgaaaaggtttggttattaacgtattgg 303  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  24405020 gttttgttaacccgaaagggtttggttattaacgtattgg 24405059  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 51537872 - 51537804
Alignment:
Q  94 tttgtgtttgttttatgggtttccgacgacggtattgttgttcgatatgagattaagtgatttagactt 162  Q
    |||||||||||||| |||||||| |||||| ||  |||||||||| |||||||   | |||||||||||    
T  51537872 tttgtgtttgttttgtgggtttcggacgactgttctgttgttcgaaatgagatcgggagatttagactt 51537804  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 10623269 - 10623370
Alignment:
Q  202 ttagacttgtacttattttgtagtagttgcatgcttgtgactcaaaaatttgaaaaggttaggttttgttaacacgaaaaggtttggttattaacgtatt 301  Q
    ||||||||||||| | |||  ||||| ||| || ||||||||||||||   ||||||||  |||| | ||||| ||| | |||||||||| |||||||||    
T  10623269 ttagacttgtactcactttacagtagctgcgtgtttgtgactcaaaaacccgaaaaggtctggttctattaacccgatagggtttggttactaacgtatt 10623368  T
Q  302 gg 303  Q
    ||    
T  10623369 gg 10623370  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 349
Target Start/End: Original strand, 18363719 - 18363771
Alignment:
Q  297 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgatt 349  Q
    |||| |||||||||||| ||||| ||||| |||||||||| ||| ||||||||    
T  18363719 gtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgatt 18363771  T

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Target: scaffold0063 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 35442 - 35386
Alignment:
Q  297 gtattggcttgagatttaggagtatgctcatcctcaaggtatcaagtttgattatct 353  Q
    |||||||||||  || ||||||||||||| |||||||||| | ||||| ||||||||    
T  35442 gtattggcttggaatctaggagtatgctcctcctcaaggtcttaagttcgattatct 35386  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 18403042 - 18403002
Alignment:
Q  128 ttgttgttcgatatgagattaagtgatttagacttgtactc 168  Q
    ||||||||||||| ||||||  |||||||||||||||||||    
T  18403042 ttgttgttcgatacgagattgggtgatttagacttgtactc 18403002  T

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