View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_1 (Length: 824)
Name: NF13717_low_1
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 782; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 782; E-Value: 0
Query Start/End: Original strand, 18 - 811
Target Start/End: Complemental strand, 54775368 - 54774575
Alignment:
| Q |
18 |
taaccaaccttagtcgaaggttgtttggatgtctcttccaaagatcttccctcctcaacatcgtcaactattacaagacctcatagaatgtactcacaac |
117 |
Q |
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| T |
54775368 |
taaccaaccttagtcaaaggttgtttggatgtctcttccaaagatcttccctccgcaacatcgtcaactattacaagacctcatagaatgtactcacaac |
54775269 |
T |
|
| Q |
118 |
aaaaacatcctcaaaggtcgaacacttcacgctcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775268 |
aaaaacatcctcaaaggtcgaacacttcacgctcgcattctaaaaactggttccatctcttccatttacgtcaccaacactttcctcaatctctacgcca |
54775169 |
T |
|
| Q |
218 |
aaaccaatcacttatcacacgctttaaccctctttgattctataaacgacaacgacaaagacgacgtttcatggaactctctcatcaacgctttctctca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775168 |
aaaccaatcacttatcacacgctttaaccctctttgattctataaacgacaacgacaaagacgacgtttcatggaactctctcatcaacgctttctctca |
54775069 |
T |
|
| Q |
318 |
aaaccattcctcttcatcttcttccttcgctataagcctctttcgtcgtatgatgcgtgccaataatgtgatccctaatgcccatacactcgccggtgtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775068 |
aaaccattcctcttcatcttcttccttcgctataagcctctttcgtcgtatgatgcgtgccaataatgtgatccctaatgcccatacactcgccggtgtt |
54774969 |
T |
|
| Q |
418 |
ttcttggctgcttctaatctttctgacgtagtagccggaaaacaagctcattctgttgcagttaagactggatgttctggtgatgtatatgtgggaagtt |
517 |
Q |
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| T |
54774968 |
ttctcggctgcttctaatctttctgacgtagtagccggaaaacaagctcattctgttgcagttaagactggatgttctggtgatgtatatgtgggaagtt |
54774869 |
T |
|
| Q |
518 |
ctcttcttaatatgtattgtaaaactggttttgttttcgatgctcgtaaactgtttgacagaatgcctgagagaaatacggtttcttgggctactatgat |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774868 |
ctcttcttaatatgtattgtaaaactggttttgttttcgatgctcgtaaactgtttgacagaatgcctgagagaaatacggtttcttgggctactatgat |
54774769 |
T |
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| Q |
618 |
ttctgggtatgcttctagtgatattgctgataaggcggttgaggtttttgaacttatgcggcgtgaggaagagattcaaaatgagtttgctctcactagt |
717 |
Q |
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| T |
54774768 |
ttctgggtatgcttctagtgatattgctgataaggcggttgaggtttttgaacttatgcggcgtgaggaagagattcaaaatgagtttgctctcactagt |
54774669 |
T |
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| Q |
718 |
gttctaagtgcattgacaagtgatgtgtttgtgtacactggtagacaggttcattcacttgctattaaaaatggtttgcttgccattgtctctg |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54774668 |
gttctaagtgcattgacaagtgatgtgtttgtgtacactggtagacaggttcattcacttgctattaaaaatggtttgcttgccattgtctctg |
54774575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 30163352 - 30163389
Alignment:
| Q |
569 |
tgtttgacagaatgcctgagagaaatacggtttcttgg |
606 |
Q |
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| T |
30163352 |
tgtttgacagaatgcctgagagaaatgtggtttcttgg |
30163389 |
T |
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