View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_11 (Length: 418)
Name: NF13717_low_11
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 407
Target Start/End: Complemental strand, 31944183 - 31943775
Alignment:
| Q |
19 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctannnnnn |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31944183 |
gatgaaagtttcaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctatttttt |
31944084 |
T |
|
| Q |
119 |
nnnattcaatgttga---------taaattt-----gtgttttcttatattttacttgatttcatgagtttggtccttnnnnnnnn---tgttgaatgtt |
201 |
Q |
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|||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
31944083 |
tttattcaatgttgaatgtttgcttatattttacttgtgttttcttatattttacttgatttcatgagtttagtccttcaaaaaaaaaatgttgaatgtt |
31943984 |
T |
|
| Q |
202 |
tgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttgattt-atgttgaaagnnnnnnnnnnn--agggttt |
298 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
31943983 |
tgctgttttaggatttatttctatgattacatgttgaaaattcggtgtttatgttattttgtttgattttatgttgaaagtttttttttttttagggttt |
31943884 |
T |
|
| Q |
299 |
atttcttcacatgttgaaaattttgttttcagggtttatttcttcatgttggaaattatattttaattgacatgatttcatgctgaaaattgtttgtttt |
398 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
31943883 |
atttcttcatatgttgaaaattttgttttcagggtttatttcttcatgttggaaattatattttaattgacatgatttcttgctgaaaattgtgtgtttt |
31943784 |
T |
|
| Q |
399 |
atggttcat |
407 |
Q |
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||||||||| |
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| T |
31943783 |
atggttcat |
31943775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 1342210 - 1342060
Alignment:
| Q |
21 |
tgaaagtttgaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttctannnnnnnn |
120 |
Q |
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||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
1342210 |
tgaaagtttgaaggcgaagtttcactatcatgaagcgaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttctattttattt |
1342111 |
T |
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| Q |
121 |
nattcaatgttgataaatttgtg-ttttcttatattttacttgatttcatg |
170 |
Q |
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||| |||||||||||||||||| |||| || |||||||||| |||||||| |
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| T |
1342110 |
tattaaatgttgataaatttgtgcttttgttttattttactttatttcatg |
1342060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 407
Target Start/End: Complemental strand, 1341981 - 1341881
Alignment:
| Q |
309 |
atgttgaaaattttgttttc-agggtttatttcttcatgttggaaattatattttaatt-gacatgatttcatgctgaaaattgtttgttttatggttca |
406 |
Q |
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||||| ||||||||||||| ||||||||||||||| |||||||||||| ||||| || ||||||||||| |||| |||||||| |||||||||||||| |
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| T |
1341981 |
atgttcaaaattttgttttttagggtttatttcttcttgttggaaattaaatttttctttgacatgatttcttgcttaaaattgtgtgttttatggttca |
1341882 |
T |
|
| Q |
407 |
t |
407 |
Q |
| |
|
| |
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|
| T |
1341881 |
t |
1341881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 270
Target Start/End: Complemental strand, 1342052 - 1341983
Alignment:
| Q |
200 |
tttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgt-ttatgttattttgtttgattt |
270 |
Q |
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|||| ||||||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
1342052 |
tttggtgttttagggtttatttctttgattgcatgttgaaaatt--gtgtattatgttattttgtttgattt |
1341983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 9394671 - 9394578
Alignment:
| Q |
19 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
9394671 |
gatgaaagtttgaaggcaaagtttcactaccgtgaagccaaggttgatgggattttatataagctggaggataatgcttatgtcaaggtttcta |
9394578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 9394534 - 9394445
Alignment:
| Q |
191 |
tgttgaatgtttgctgttttaggatttatttctatgattgcatgttgaaaattcggtgtttatgttattttgtttga-tttatgttgaaa |
279 |
Q |
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||||||| |||| ||||||||| ||||||||| ||||| ||||||| || | || ||||||||||||||||||| |||||||||||| |
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| T |
9394534 |
tgttgaaaatttgatgttttagggtttatttctttgatttcatgttggcaactgtgtttttatgttattttgtttgattttatgttgaaa |
9394445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 35535496 - 35535403
Alignment:
| Q |
19 |
gatgaaagtttgaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtttcta |
112 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||| || | ||||| ||||| |||||||||||||||||||||||| |
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| T |
35535496 |
gatgaaagtttgaaggcgtagtttcattaccgtgaagcgaaagttgatggggttatatataatctggataataatgcttatgtcaaggtttcta |
35535403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 5644378 - 5644299
Alignment:
| Q |
29 |
tgaaggcgaagtttcactaccgtgaagcgaaagttgatgggattttgtataagctggacgataatgcttatgtcaaggtt |
108 |
Q |
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|||||||||||||||| |||||||||| ||| ||||||||| || | ||||||||| | |||||||||||||| |||||| |
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| T |
5644378 |
tgaaggcgaagtttcattaccgtgaagtgaatgttgatggggttatatataagctgaatgataatgcttatgttaaggtt |
5644299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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