View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_12 (Length: 400)
Name: NF13717_low_12
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 114 - 382
Target Start/End: Complemental strand, 48096477 - 48096222
Alignment:
| Q |
114 |
ctccagctggatggatactccattactattgctaatgctaaatgagtagtggtcaaaacccccattgaagtaacagttaacaactcataatcaattaaca |
213 |
Q |
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| T |
48096477 |
ctccagctggatggatactccattactattgctaa------atgagtagtggtcaaaacccc-attgaagtaacagttaacaactcataatcaattaaca |
48096385 |
T |
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| Q |
214 |
atgtaattattaattgattatggtaaatgagtagatgaaattatatatattcgggtcccgaagagacctgtggttgataatctctttagccacattctca |
313 |
Q |
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| T |
48096384 |
atgtactcaatacaaacctatccaaca------gatgaaattatatatattcgggtcccgaagagacctgtggttgataatctctttagccacattctca |
48096291 |
T |
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| Q |
314 |
tcaatctggaaatcaagtagcagaaaaagtaacnnnnnnntaataacttttcaaaatcagggggagttt |
382 |
Q |
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| T |
48096290 |
tcaatctggaaatgaagtagcagaaaaagtaagaaaaaaataataacttttcaaaatcagggggagttt |
48096222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 92
Target Start/End: Complemental strand, 48096513 - 48096483
Alignment:
| Q |
62 |
gctgaaccgaccagcattacagatcctctct |
92 |
Q |
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| T |
48096513 |
gctgaaccgaccagcattacagatcctctct |
48096483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 39883164 - 39883244
Alignment:
| Q |
259 |
tatattcgggtcccgaagagacctgtggttgataatctctttagccacattctcatcaatctggaaatcaagtagcagaaa |
339 |
Q |
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| T |
39883164 |
tatatttgggtgccgaagagacctgtggttgataatctctctagccacattctcatcaatctggaaatgaagtagcagaaa |
39883244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 39882940 - 39882982
Alignment:
| Q |
49 |
taacctcatctttgctgaaccgaccagcattacagatcctctc |
91 |
Q |
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| T |
39882940 |
taacctcatcttcgctgaaccgaccagcattacagatcctctc |
39882982 |
T |
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