View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_13 (Length: 396)
Name: NF13717_low_13
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 37161450 - 37161231
Alignment:
| Q |
9 |
agcagagaatggtacttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaa |
108 |
Q |
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| T |
37161450 |
agcagagaatggtacttagctggatattccactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaa |
37161351 |
T |
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| Q |
109 |
tccctgataatcatctagccgttgaaactctccttctctccgttgatccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcaca |
208 |
Q |
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| T |
37161350 |
tccctgataatcatctagcagttgaaactctccttctttccgttgacccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcaca |
37161251 |
T |
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| Q |
209 |
atatcaacttaatcaggtac |
228 |
Q |
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| T |
37161250 |
atatcaacttaatcaggtac |
37161231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 37155849 - 37155692
Alignment:
| Q |
9 |
agcagagaatggtacttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaa |
108 |
Q |
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| T |
37155849 |
agcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaa |
37155750 |
T |
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| Q |
109 |
tccctgataatcatctagccgttgaaactctccttctctccgttgatccttatcttcg |
166 |
Q |
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| T |
37155749 |
tccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcg |
37155692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 37150718 - 37150504
Alignment:
| Q |
14 |
agaatggtacttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccct |
113 |
Q |
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| T |
37150718 |
agaatggtacgtagctgcatactctcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatccct |
37150619 |
T |
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| Q |
114 |
gataatcatctagccgttgaaactctccttctctccgttgatccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcacaatatc |
213 |
Q |
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| T |
37150618 |
gatgaccatctaatcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttgaaggccttttcattccacaatatc |
37150519 |
T |
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| Q |
214 |
aacttaatcaggtac |
228 |
Q |
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| T |
37150518 |
aacttaatcaggtac |
37150504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 37161173 - 37161095
Alignment:
| Q |
302 |
tgtaggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattctttt |
380 |
Q |
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| T |
37161173 |
tgtaggtcattacagtatttgcagttgtaagagtgattagatccaaggatagtaaatacagtgagggggatattctttt |
37161095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 37150290 - 37150215
Alignment:
| Q |
305 |
aggtgattacagtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattctttt |
380 |
Q |
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||||| ||||| |||||| |||||||| || ||| |||| ||||||||||||||||||||||||||||| ||||| |
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| T |
37150290 |
aggtgcttacaacatttgcggttgtaagggtaattcgatcgaaggatagtaaatacagtgagggggatatcctttt |
37150215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 380
Target Start/End: Complemental strand, 37155426 - 37155361
Alignment:
| Q |
315 |
agtatttgcagttgtaagagtgattagatcaaaggatagtaaatacagtgagggggatattctttt |
380 |
Q |
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| T |
37155426 |
agtatttgcaattgtaagagtaattcgatcaaaggatagtaaatacactgaaggagatatcctttt |
37155361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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