View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_14 (Length: 393)
Name: NF13717_low_14
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 34055307 - 34055676
Alignment:
| Q |
19 |
cggagatggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcac |
118 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055307 |
cggagatggtagataaacaatacatgtgcctgttgaagttgaactcgagaaccagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcac |
34055406 |
T |
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| Q |
119 |
tgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34055407 |
tgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattca |
34055506 |
T |
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| Q |
219 |
cagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctattt |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34055507 |
cagttggctttggcactttcactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagtgttgtggctcctattt |
34055606 |
T |
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| Q |
319 |
acttaagagatggaatgtgttgcaagctcagcatatgcaaaaccatatgtatgtcttcgttcttctcact |
388 |
Q |
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|||||||||||||||| ||| ||||| ||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
34055607 |
acttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttcgttcttcgcact |
34055676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 216 - 316
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
| Q |
216 |
tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
47381351 |
tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta |
47381253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 47381872 - 47381702
Alignment:
| Q |
33 |
aaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataa |
132 |
Q |
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||||||||| |||| ||||||||| ||||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47381872 |
aaacaatacctgtgcatgttgaagtcgaactcgggaaccagcttcatcaatcaaatctatagctttgtcaggcaaaaatcgatcactgcagaagacataa |
47381773 |
T |
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| Q |
133 |
ttattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca |
220 |
Q |
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||||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
47381772 |
ttatt-----------------attaagataaacagcaggtggaaaacaacaagatacagggtacagtttgattcattcatattcaca |
47381702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
| Q |
216 |
tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc |
312 |
Q |
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| T |
47816816 |
tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc |
47816721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 47817348 - 47817261
Alignment:
| Q |
50 |
gttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattatt |
137 |
Q |
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|||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
47817348 |
gttgaagtcgaactcgggaaccagcttcgtcaatcaaatctatagctttgtcaggcaaaaatcgaccactgcagaagacataattatt |
47817261 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 298
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
| Q |
218 |
acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc |
298 |
Q |
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|||||||| | ||| ||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
45113434 |
acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc |
45113354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
| Q |
156 |
ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca |
220 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
47817259 |
ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca |
47817195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 45114569 - 45114470
Alignment:
| Q |
26 |
ggtagataaacaatacac--gtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcag |
123 |
Q |
| |
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|||||| |||||||| || |||| |||||||| | ||||| ||| ||||||| || ||||||| || |||||||| ||||||||| ||||||||||| |
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| T |
45114569 |
ggtagacaaacaatatacctgtgcatgttgaagacggactcgtgaaccagcttcatcaatcaaatcaatggctttgtcgggcaaaaatcgatcactgcag |
45114470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
| Q |
218 |
acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat |
316 |
Q |
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|||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
40244059 |
acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat |
40243962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 40244561 - 40244398
Alignment:
| Q |
25 |
tggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcaga |
124 |
Q |
| |
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|||| ||| |||||||| |||| ||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||||||||| |||| ||||| | |
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| T |
40244561 |
tggtggatgaacaatacctgtgcatgttgaagtcggactcgggaaccagcttcatcaatcaaatctatagctttgtcaggcaaaaatcgatcgctgcaaa |
40244462 |
T |
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| Q |
125 |
agacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagata |
189 |
Q |
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|| |||||||||||||||| ||||||| |||| | |||||||||| |||||| | ||||||||| |
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| T |
40244461 |
agtcataattattttatgagtgagaaaacacttga-ataaacagcaagtagaagataacaagata |
40244398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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