View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_16 (Length: 337)
Name: NF13717_low_16
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 52356797 - 52356487
Alignment:
| Q |
20 |
gcgcacaccggcacctgcacggtacttaacacacatgattgcaatcaattttgtgtctgacactggcacaacacttaacaacatgattacattcaatttt |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
52356797 |
gcgcacaccggcacctgcacggcacttaacacacatgattgcaatcaattttgtgtctgacactggcacaacacttaactacgtgattacattcaatttt |
52356698 |
T |
|
| Q |
120 |
gtcattttcttaaatcattattggttgatgggtcagtgttatgtccagtgtatgtgtcgatgctttataggtgatatgcctgagcagagagatatgtacc |
219 |
Q |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52356697 |
gttattttctcaaatcattattggttgatgggtcagtgttatgtccagtgtatgtggcaatgctttataggtgatatgcctgagcagagagatatgtacc |
52356598 |
T |
|
| Q |
220 |
gttgttgtttctatccaatataatttacttgctgttacgtaattccttcattctcatgtattatttattttgggatatttgaagagagaaatacatgcat |
319 |
Q |
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||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52356597 |
gttgttgtttctatccaatttaatttacttggtgttacttaattccttcattctcatgtattatttattttgggatatttgaagagagaaatacattcat |
52356498 |
T |
|
| Q |
320 |
tggtgtttgat |
330 |
Q |
| |
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||||||||||| |
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| T |
52356497 |
tggtgtttgat |
52356487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 136
Target Start/End: Complemental strand, 13709230 - 13709197
Alignment:
| Q |
103 |
tgattacattcaattttgtcattttcttaaatca |
136 |
Q |
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| T |
13709230 |
tgattacattcaattttgtcattttcttaaatca |
13709197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 26096738 - 26096772
Alignment:
| Q |
100 |
acatgattacattcaattttgtcattttcttaaat |
134 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
26096738 |
acatgattacattcaattttctcattttcttaaat |
26096772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 8917551 - 8917584
Alignment:
| Q |
103 |
tgattacattcaattttgtcattttcttaaatca |
136 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
8917551 |
tgattacattcaattatgtcattttcttaaatca |
8917584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Complemental strand, 7038755 - 7038721
Alignment:
| Q |
106 |
ttacattcaattttgtcattttcttaaatcattat |
140 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
7038755 |
ttacattcaattttgtcattttcttaaattattat |
7038721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 50216697 - 50216730
Alignment:
| Q |
103 |
tgattacattcaattttgtcattttcttaaatca |
136 |
Q |
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||||||||||||||| |||||||||||||||||| |
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|
| T |
50216697 |
tgattacattcaattatgtcattttcttaaatca |
50216730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 18750920 - 18750884
Alignment:
| Q |
103 |
tgattacattcaattttgtcattttcttaaatcatta |
139 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||| |
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|
| T |
18750920 |
tgattacattcaattatgtcattttcttaaattatta |
18750884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 30367634 - 30367670
Alignment:
| Q |
103 |
tgattacattcaattttgtcattttcttaaatcatta |
139 |
Q |
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||||||||||||||| |||||||||||||||| |||| |
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| T |
30367634 |
tgattacattcaattatgtcattttcttaaattatta |
30367670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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