View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_18 (Length: 272)
Name: NF13717_low_18
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 25362926 - 25363167
Alignment:
| Q |
19 |
acaatctacattaaccattgatcatacataaaaataaaaccaatttttagaaaagaatcattcacacactaatttgttccgaaaacaccaaatttctcta |
118 |
Q |
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| T |
25362926 |
acaatctacattaaccattgatcatacataaaaataaaaccaatttttagaaaagaatcattcacacactaatttgttccgaaaacaccaaatttcttta |
25363025 |
T |
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| Q |
119 |
tttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaatggagctcacactaggagggtttttgatgagaatgagattgttcctt |
218 |
Q |
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| T |
25363026 |
tttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaatggaactcacactaggaggg--tttgatgagaatgagattgttcctt |
25363123 |
T |
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| Q |
219 |
tttccttgctgctttctctacaatttttcatttcctcgcctatg |
262 |
Q |
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| T |
25363124 |
tttccttgctgctttcactacaatttttcatttcctcgcctatg |
25363167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 25360787 - 25360878
Alignment:
| Q |
79 |
ttcacacactaatttgttccgaaaacaccaaatttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
172 |
Q |
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| T |
25360787 |
ttcacacccttaattgatcccaaaaccccaaatttctctatttcataccctaatcta--aaattgatagacatgcatgaagaaaggaatcaaat |
25360878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 25359848 - 25359914
Alignment:
| Q |
106 |
ccaaatttctctatttcacaccgtaatctctgaagttggtagacatgcatgaagaaaggaatcaaat |
172 |
Q |
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| T |
25359848 |
ccaaatttctttgtttcataccctaatctctgaaattgctagacatgcataaagaaaggaattaaat |
25359914 |
T |
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