View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13717_low_19 (Length: 252)

Name: NF13717_low_19
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13717_low_19
NF13717_low_19
[»] scaffold0150 (2 HSPs)
scaffold0150 (1-240)||(17903-18142)
scaffold0150 (85-187)||(9060-9162)
[»] chr8 (5 HSPs)
chr8 (1-225)||(17016931-17017155)
chr8 (1-225)||(17547368-17547592)
chr8 (85-187)||(17020108-17020210)
chr8 (85-187)||(17550545-17550647)
chr8 (70-187)||(17522266-17522383)
[»] chr1 (4 HSPs)
chr1 (49-191)||(52145701-52145843)
chr1 (70-158)||(52142204-52142292)
chr1 (69-190)||(52133834-52133955)
chr1 (69-161)||(52155007-52155099)


Alignment Details
Target: scaffold0150 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18142 - 17903
Alignment:
Q  1 ctctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18142 ctctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtcta 18043  T
Q  101 tgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaa 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042 taacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaa 17943  T
Q  201 atgcacacgtcaaaaatcaatacctagagactagtattat 240  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  17942 atgcacacgttaaaaatcaatacctagagactagtattat 17903  T

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Target: scaffold0150; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 187
Target Start/End: Original strand, 9060 - 9162
Alignment:
Q  85 ttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag 184  Q
    ||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | |||||||| |||||||||||||||| |||| |||||||||    
T  9060 ttgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaatgagaagtttgagggtcactttgttggtggaag 9159  T
Q  185 aag 187  Q
    |||    
T  9160 aag 9162  T

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Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17016931 - 17017155
Alignment:
Q  1 ctctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17016931 ctctggtagaggttgcctaagctcccaaccatttcgttcttgttgagaagctttactacgttacctataggcaagcatagcatgttgaaaagaaagtcta 17017030  T
Q  101 tgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaa 200  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17017031 cgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaa 17017130  T
Q  201 atgcacacgtcaaaaatcaatacct 225  Q
    || ||||||||||||||| ||||||    
T  17017131 atacacacgtcaaaaatcgatacct 17017155  T

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Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 17547368 - 17547592
Alignment:
Q  1 ctctggtagaggttgcctaagctcccaaccatttcgttcttgctgagaagctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17547368 ctctggtagaggttgcctaagctcccaaccatttcgttcttgttgagaagctttactacgttacctataggcaagcatagcatgttgaaaagaaagtcta 17547467  T
Q  101 tgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaa 200  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17547468 cgacgggtttagatgcttcagcaaagagaactctttcaatctttgtgtcaataagaagtttgagggtcagtttggtggtggaagaagaagacatattgaa 17547567  T
Q  201 atgcacacgtcaaaaatcaatacct 225  Q
    || ||||||||||||||| ||||||    
T  17547568 atacacacgtcaaaaatcgatacct 17547592  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 17020210 - 17020108
Alignment:
Q  85 ttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag 184  Q
    ||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| |||| |||||||||    
T  17020210 ttgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttggtggaag 17020111  T
Q  185 aag 187  Q
    |||    
T  17020110 aag 17020108  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 17550647 - 17550545
Alignment:
Q  85 ttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtcagtttggtggtggaag 184  Q
    ||||||||||| ||||| || | ||| |||||||||||||| |||||| | |||||| | ||||||||||||||||||||||||| |||| |||||||||    
T  17550647 ttgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaactttctcattcatggtgtcaataagaagtttgagggtcactttgttggtggaag 17550548  T
Q  185 aag 187  Q
    |||    
T  17550547 aag 17550545  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 17522383 - 17522266
Alignment:
Q  70 ggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtca 169  Q
    ||||||||||||| ||||||||||||||| |  || | ||| || |||||||||||||||||| | | |||||||||||| |||||||| || | || ||    
T  17522383 ggcaagcatagcaagttgaaaagaaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaagcttcatggaca 17522284  T
Q  170 gtttggtggtggaagaag 187  Q
     ||||||||  |||||||    
T  17522283 ctttggtggaagaagaag 17522266  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 52145701 - 52145843
Alignment:
Q  49 agctttactacgttgcctataggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgt 148  Q
    ||||| || ||| |||| || |||||||||||||  ||||| ||||||||||| || | ||| || |||||||||||||||||| | ||||||||||| |    
T  52145701 agcttaaccacggtgccaattggcaagcatagcaaattgaacagaaagtctattacagattttgaagcttcagcaaagagaactttctcattctttgtat 52145800  T
Q  149 caataagaagtttgagggtcagtttggtggtggaagaagaaga 191  Q
    | |||||||| || |  | || ||||||||| |||||||||||    
T  52145801 ctataagaagcttcaaagacactttggtggtagaagaagaaga 52145843  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 52142204 - 52142292
Alignment:
Q  70 ggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaag 158  Q
    ||||| ||||||| ||||||||||||||||| ||| | ||| || |||||||||||||||||| | | |||||||||||| ||||||||    
T  52142204 ggcaaacatagcaagttgaaaagaaagtctacgacagcttttgaagcttcagcaaagagaactttctgattctttgtgtcgataagaag 52142292  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 52133834 - 52133955
Alignment:
Q  69 aggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagtttgagggtc 168  Q
    ||||||||  |||| ||| || ||||| ||||| || | ||| || |||||||| || |||||| | ||||| || |||||||| |||||||||||||||    
T  52133834 aggcaagcgaagcaagttaaagagaaaatctatcacagctttggaagcttcagcgaacagaactttgtcatttttagtgtcaatgagaagtttgagggtc 52133933  T
Q  169 agtttggtggtggaagaagaag 190  Q
    | |||| |||  ||||||||||    
T  52133934 actttgttgggagaagaagaag 52133955  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 52155007 - 52155099
Alignment:
Q  69 aggcaagcatagcatgttgaaaagaaagtctatgacgggtttagatgcttcagcaaagagaactctttcattctttgtgtcaataagaagttt 161  Q
    |||||||| |||||||| || |||||| ||||  |||| ||| |||||||||||||| | |||| | ||||||| |||||| || ||||||||    
T  52155007 aggcaagcctagcatgtggagaagaaaatctactacggattttgatgcttcagcaaaaacaactttctcattctctgtgtctatcagaagttt 52155099  T

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