View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_2 (Length: 786)
Name: NF13717_low_2
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 12 - 771
Target Start/End: Original strand, 27669166 - 27669925
Alignment:
| Q |
12 |
catcatcaacaccaagtaatgcaagagttaggtgtaactctgtacttgaatttggatacacttcatcatcaatgttttcttcattctctgaatactcatt |
111 |
Q |
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| T |
27669166 |
catcatcaacaccaagtaatgcaagagttaggtgtaactctgtacttgaatttggatacacttcatcatcgatgttttcttcattctctgaatactcatt |
27669265 |
T |
|
| Q |
112 |
gaagcaatattcatcttcattgttcccttttaggatcttcagtatctgtacataggaatgataaacttttaagagctgaaagttttcaaaatatataatt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27669266 |
gaagcaatattcatcttcattgttcccttttaggatcttcagtatctgtacataggaatgataaacttttaagagctgaaagttttcaaaatatataatt |
27669365 |
T |
|
| Q |
212 |
gctaatgtgacttcatattgagaatttgacaacttcactgtcatttattactagatttaattggtatatacataaacaagttttacatatccattactcc |
311 |
Q |
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| T |
27669366 |
gctaatgtgacttcatattgagaatttgacaacttcactgtcatttattactagatttaattggtatttacataaacaagttttacatatccattactgc |
27669465 |
T |
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| Q |
312 |
gattaaattattggatgcatgtgtaaaaaatgttattacctgattaaatttaggacgaagtctagcagcccgtgcgatgcataaagatgctgccaaaacc |
411 |
Q |
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| T |
27669466 |
gattaaattattggatacatgtgtaaaaaatgttattacctgattaaatttaggacgaagtctagcagcccgtgcgatgcataaagatgctgccaaaacc |
27669565 |
T |
|
| Q |
412 |
attcttttcatttgggtctcatcaaacttcccttctaattttgggtccaacaaacctttaatatctccactctctattattggttttgcctgaaaatgaa |
511 |
Q |
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| T |
27669566 |
attcttttcatttgggtctcatcaaacttcccttctaattttgggtccaacaaacctttaatatctccactctctattattggttttgcctgaaaatgaa |
27669665 |
T |
|
| Q |
512 |
atcatttttcatcattcaaattttacatattatacaataaaagcatatttatcaatatctcaaaaatcaaactcgatagttgaaatcacaatttcgtatc |
611 |
Q |
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| T |
27669666 |
atcatttttcatcattcaaattttacatattatacaataaaagcatatttttcaatatttcaaaaatcaaactcgatagttgaaatcacaatttcgtatc |
27669765 |
T |
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| Q |
612 |
agttcgaacaattttaaacaattgaatcgtgactcggagtttttatcggttcaataaaaatttattctaactgaagttaggtcttacccaagctaccaag |
711 |
Q |
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| T |
27669766 |
agttcgaacaattttaaacaattgaatcgtgactcggagtttttatcggttcaataaaaatttattctaactgaagttaggtcttacccaagctaccaag |
27669865 |
T |
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| Q |
712 |
ctctcttgtcctttgcaaggttcagagctgatcggttccctacctgatattagttcaagt |
771 |
Q |
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| T |
27669866 |
ctctcttgtcctttgcaaggttcagagctgatcggttccctacctgatattagttcaagt |
27669925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 55177204 - 55177263
Alignment:
| Q |
24 |
caagtaatgcaagagttaggtgtaactctgtacttgaatttggatacacttcatcatcaa |
83 |
Q |
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| T |
55177204 |
caagtaatgcaaggctaaggtgcaattctgcacttgaatttggatagacttcatcatcaa |
55177263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 501
Target Start/End: Original strand, 55177428 - 55177585
Alignment:
| Q |
344 |
ttattacctgattaaatttaggacgaagtctagcagcccgtgcgatgcataaagatgctgccaaaaccattcttttcatttgggtctcatcaaacttccc |
443 |
Q |
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|||| |||||||| | ||||||||||||| ||||| |||| ||||| | ||||||||| | ||||||||| | |||||| | ||||||| || || |
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| T |
55177428 |
ttatcacctgattcatattaggacgaagtcgcgcagctcgtgtaatgcacagagatgctgcaagaaccattctgtgcatttgtgctacatcaaattttcc |
55177527 |
T |
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| Q |
444 |
ttctaattttgggtccaacaaacctttaatatctccactctctattattggttttgcc |
501 |
Q |
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|| || ||||| ||||| || | ||||| ||| |||||||||| |||||||||||| |
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| T |
55177528 |
ttgcaactttggatccaataagcttttaacatccccactctctaaaattggttttgcc |
55177585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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