View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_20 (Length: 248)
Name: NF13717_low_20
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_20 |
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| [»] scaffold0150 (1 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 18294 - 18514
Alignment:
| Q |
10 |
attattctcacggctgagttggacgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaatg |
109 |
Q |
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| T |
18294 |
attattctcacggctgagttggacgatgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagaggaagaagagacagaggagaatg |
18393 |
T |
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| Q |
110 |
atgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaa |
209 |
Q |
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| T |
18394 |
atgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgcaa |
18493 |
T |
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| Q |
210 |
gaaaccgatgaaccgagaaac |
230 |
Q |
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| T |
18494 |
gaaaccgatgaaccgagaaac |
18514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 17016778 - 17016568
Alignment:
| Q |
11 |
ttattctcacggctgagttggacga---tgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaa |
107 |
Q |
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| T |
17016778 |
ttattctcacggctgagttggacgacgatgaggatcaagaggaagatgaagaatatgacga------------tgaagaggaagaagagacagaggagga |
17016691 |
T |
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| Q |
108 |
tgatgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
207 |
Q |
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| T |
17016690 |
tgatgaagaaaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
17016591 |
T |
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| Q |
208 |
aagaaaccgatgaaccgagaaac |
230 |
Q |
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| T |
17016590 |
aagaaaccgatgaaccgagaaac |
17016568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 17547215 - 17547005
Alignment:
| Q |
11 |
ttattctcacggctgagttggacga---tgaggatcaagaggaagatgaagaatatgacgaggacgatgacgatgaagtggaagaagagacagaggagaa |
107 |
Q |
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| T |
17547215 |
ttattctcacggctgagttggacgacgatgaggatcaagaggaagatgaagaatatgacga------------tgaagaggaagaagagacagaggagga |
17547128 |
T |
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| Q |
108 |
tgatgaagaagccataggaggagagactttgctttatgtttgccctaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
207 |
Q |
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| T |
17547127 |
tgatgaagaaaccataggaggagagactttgctttatgtttgcccgaaaaaatgtagttatgatgttacatgtgataaaacaactctttgttctcgttgc |
17547028 |
T |
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| Q |
208 |
aagaaaccgatgaaccgagaaac |
230 |
Q |
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| T |
17547027 |
aagaaaccgatgaaccgagaaac |
17547005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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