View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13717_low_3 (Length: 671)
Name: NF13717_low_3
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 342 - 656
Target Start/End: Complemental strand, 25577959 - 25577645
Alignment:
| Q |
342 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatattttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
441 |
Q |
| |
|
|||||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25577959 |
cattgctttcagaatcggttatgattatgtccaaatcacttatgttttgagagagaggtcaaccttgtggcggatagtgtagccaagtcggggttttctt |
25577860 |
T |
|
| Q |
442 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaaccttcccttttgacggatagtt |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25577859 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaaccttcccttttggcggatagtt |
25577760 |
T |
|
| Q |
542 |
taactataacatatttagtaaatggctttcagaccaagacacaactcacctaaacttttatttttcaataaaaaatatagaaaattggcaaacagggata |
641 |
Q |
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|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25577759 |
taactataacatatttattaaatggctttcagaccgagacacaactcacctaaacttttatttttcaataaaaaatatagaaaattggcaaacagggata |
25577660 |
T |
|
| Q |
642 |
aaagaatgttgattt |
656 |
Q |
| |
|
||||||||||||||| |
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|
| T |
25577659 |
aaagaatgttgattt |
25577645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 26136767 - 26136420
Alignment:
| Q |
13 |
gagaagaaggagaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagt |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26136767 |
gagaagaagaagaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagt |
26136668 |
T |
|
| Q |
113 |
tttgaagctagcaaagataagac-----------------tattatagcacctggaagaaagaaagnnnnnnnnnngacccaacaaacaacaattaatta |
195 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
26136667 |
tttgaagctaacaaagataagacaattaattgctctatactattatagcacctggaagaaagaa--gaaaaaaaaagacccaacaaacaacaattaatta |
26136570 |
T |
|
| Q |
196 |
cgttattttcttctctttgttaaaataagaaaagaaattaattaccgtcggttgaaacctttgtttgaaattatgcttactaggggtgggtatggttcgg |
295 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
26136569 |
cgttattttcttctctttgttaaaaaaaaaaaagaaattaattaccgtcggttgaaaccttggtttgaaattatgcttactagggatgggtatggttcgg |
26136470 |
T |
|
| Q |
296 |
agttaattgctctatgagtaatgtttgggatactctctttaacactcatt |
345 |
Q |
| |
|
||||||||| | ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26136469 |
agttaattgttttatgagtaatgcttgggatactctctttaacattcatt |
26136420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 25578460 - 25578116
Alignment:
| Q |
13 |
gagaagaaggagaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagt |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25578460 |
gagaagaagaagaagactgaagtggaagagattgtttgaaattgaacgataacaaagggttactatgtaattacttatttacccttattacttgtggagt |
25578361 |
T |
|
| Q |
113 |
tttgaagctagcaaagataagac-----------------tattatagcacctggaagaaagaaagnnnnnnnnnngacccaacaaacaacaattaatta |
195 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
25578360 |
tttgaagctagcaaagataagacaattaattgctctatactattatcgcacctggaagaaagaaagaaaaaaaaaa-acccaacaaacaacaattaatta |
25578262 |
T |
|
| Q |
196 |
cgttattttcttctctttgttaaaataagaaaagaaattaattaccgtcggttgaaacctttgtttgaaattatgcttactaggggtgggtatggttcgg |
295 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
25578261 |
cgttattttcttctgtttgttaaaaaaagaaaagaaattaattaccgtcggttgaaaccttggtttgaaattatgcttactaggggtgggtatggttcgg |
25578162 |
T |
|
| Q |
296 |
agttaattgctctatgagtaatgtttgggatactctctttaacact |
341 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
25578161 |
agttatctgctctatgagcaatgtttgagatactctctttaacact |
25578116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 342 - 522
Target Start/End: Complemental strand, 26136286 - 26136106
Alignment:
| Q |
342 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatattttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26136286 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatgttttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
26136187 |
T |
|
| Q |
442 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaacct |
522 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26136186 |
catatgttacttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaacct |
26136106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 517 - 656
Target Start/End: Complemental strand, 26128923 - 26128784
Alignment:
| Q |
517 |
taaccttcccttttgacggatagtttaactataacatatttagtaaatggctttcagaccaagacacaactcacctaaacttttatttttcaataaaaaa |
616 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26128923 |
taaccttcccttttggcggatagtttaactataacatatttagtaaatggctttcagaccgagacacaactcacctaaacttttatttttcaataaaaaa |
26128824 |
T |
|
| Q |
617 |
tatagaaaattggcaaacagggataaaagaatgttgattt |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26128823 |
tatagaaaattggcaaacagggataaaagaatgttgattt |
26128784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 342 - 656
Target Start/End: Complemental strand, 33852460 - 33852148
Alignment:
| Q |
342 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatattttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
441 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||| |||||||||||||| |
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|
| T |
33852460 |
cattgctttcagtatc--ttatgattatgtcaaaatcacttatgttttgagagagaggtcaaccttgtg-cggatagtgtagcctggtcggggttttctt |
33852364 |
T |
|
| Q |
442 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaaccttcccttttgacggatagtt |
541 |
Q |
| |
|
| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
33852363 |
cggatgttcctcgtggaatttttaatttgattcctgcttttatctctaactcccttttgtgggatgtttgttgtgtaaccttcccttttggcggatagtt |
33852264 |
T |
|
| Q |
542 |
taactataacatatttagtaaatggctttcagaccaagacacaactcacctaaacttttatttttcaataa-aaaatatagaaaattggcaaacagggat |
640 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33852263 |
taactataacacaattagtaaatggcttccagaccgagacccaactcacctaaacttttatttttcaataaaaaaatatagaaaattggcaaacagggat |
33852164 |
T |
|
| Q |
641 |
aaaagaatgttgattt |
656 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33852163 |
aaaagaatgttgattt |
33852148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 23 - 345
Target Start/End: Complemental strand, 33852940 - 33852605
Alignment:
| Q |
23 |
agaagactgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagttttgaagcta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
33852940 |
agaagactgaagtggaagagattgtttgaaattgaaagataacaaagggttactaagtaattacttatttacccttattacttgtggagtct-gaagcta |
33852842 |
T |
|
| Q |
123 |
gcaaagataagac-------------tattatagcacctggaagaaagaaagnnnnnnnnnn-gacccaacaaacaacaattaattacgttattttcttc |
208 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
33852841 |
gcaaagataagacaattgctctatactattatagcacctggaagaaaaaaagaaaaaaaaaaagactcaacaaacaacaattaattacattattttcttc |
33852742 |
T |
|
| Q |
209 |
tctttgttaaaataagaaaagaaattaattaccgtcggttgaaacctttgtttgaaattatgcttactaggggtgggtatggttcggagttaattgctct |
308 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| ||| |
|
|
| T |
33852741 |
tctttgttaaaaaaagaaaagaaattaattatcgtaggttgaaaccttagtttggaattatgcttattaggggtgggtatggttcggggttaattgttct |
33852642 |
T |
|
| Q |
309 |
atgagtaatgtttgggatactctctttaacactcatt |
345 |
Q |
| |
|
|||| ||||||||| || | ||||||||||||||||| |
|
|
| T |
33852641 |
atgactaatgtttgagacattctctttaacactcatt |
33852605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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