View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_4 (Length: 627)
Name: NF13717_low_4
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 237 - 610
Target Start/End: Complemental strand, 37168215 - 37167842
Alignment:
| Q |
237 |
aaagaaaacactgaccaatattcccgctattttgataggccgacaataggacaaaatatgttacattagacaggaactcaaccttgatttacaataaact |
336 |
Q |
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| T |
37168215 |
aaagaaaacactgaccaatattcccgctattttgataggccgacaataggacaaaatatgttacattagacaggaactcaaccttgatttacaataaact |
37168116 |
T |
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| Q |
337 |
acgatctgctgaagaccactgtgacatcatgctaccaacttaaaacaataaactagataacaaaagcagcatcttaatttctttcatgttctttacgtat |
436 |
Q |
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| T |
37168115 |
acgatctgctgaagaccactgtgacatcatgctaccaacttaaaacaataaactagataacaaaagcagcatcttaatttctttcatgttctttacgtat |
37168016 |
T |
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| Q |
437 |
ttagattagattataagttaatttaatacatgaaacaataatgaaaattcatcaataaaaacaattaattaacgtaacaactgcatcaagacaacacata |
536 |
Q |
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| T |
37168015 |
ttagattagattataagttaatttaatacatgaaacaataatgaaaattcatcaataaaaacaattaattaacgtaacaactgcatcaagacaacacata |
37167916 |
T |
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| Q |
537 |
tatnnnnnnnttcatgtgggaatctcagttcctcctcctcggtaccataataatacaatgtccacgccgtatgt |
610 |
Q |
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| T |
37167915 |
tataaaaaaattcatgtgggaatctcagttcctcctcctcggtaccataataatacaatgtccacgccgtatgt |
37167842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 37168464 - 37168371
Alignment:
| Q |
14 |
atcacatgattagccttttgctcgatggtgtagtagtatttaggactccaaagtgttgagcgtagttttttggttagtccagaacaatccttag |
107 |
Q |
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| T |
37168464 |
atcacaagattagccttttgctcgatggtgtagtagtatttaggactccaaagtgttgagcatagttttttggttagtccagaacaatccttag |
37168371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 37168325 - 37168235
Alignment:
| Q |
153 |
aggagtataagcattaagcaacgttttgtttggttcataatcctt-agtttacaaagtagaactataatgagaggacaatattccaaagaa |
242 |
Q |
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| T |
37168325 |
aggagtataagcattaagcaacgtattgtttggttcataatcctttagtttacaaagtagaactataatgagaggacaatattccaaagaa |
37168235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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