View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_5 (Length: 592)
Name: NF13717_low_5
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 576
Target Start/End: Complemental strand, 42087711 - 42087143
Alignment:
| Q |
8 |
aagcatgagttgcttggagacacctcagaattcaaagaagaaaaacaagaagatagaaaacaagagaaggtttagtgatgaacagataagatcactagaa |
107 |
Q |
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| T |
42087711 |
aagcatgagttgcttagagacacctcagaattcaaagaagaaaaacaagaagatagaaaacaagagaaggtttagtgatgaacagataagatcactagaa |
42087612 |
T |
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| Q |
108 |
tgcatatttgagtcagaatcaaagttggaaccaaggaagaagatgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcaga |
207 |
Q |
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| T |
42087611 |
tgcatatttgagtcagaatcaaagttggaaccaaggaagaagatgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcaga |
42087512 |
T |
|
| Q |
208 |
acagaagagcaagatggaaatcaaaaaggatagaacaagaatacagaaaactcaaagatgattatgataatttagcttctaagtttcagtgccttaagga |
307 |
Q |
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| T |
42087511 |
acagaagagcaagatggaaatcaaaaaggatagaacaagaatacagaaaactcaaagatgaatatgataatttagcttctaagtttcagtgccttaagga |
42087412 |
T |
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| Q |
308 |
agagaaagagtctttgcaatcagaggtaagttggtactttggttcttgcaattatattgtaacataactagagttgtgtctcgataaacagcttaattta |
407 |
Q |
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| T |
42087411 |
agagaaagagtctttgcaatcagaggtaagttagtactttggttcttgcaattatattgtaacataactatagttgtgtctcgataaacagtttaattta |
42087312 |
T |
|
| Q |
408 |
aacgagttcagctattcgtgaactattcatgctcaactcgcaaaatattcggttaagtttgtttatttatttactcaagcttcgtattaggctcgattaa |
507 |
Q |
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| T |
42087311 |
aacgagttcagctattcgtgaactattcatgctcaactcgcaaaatattcggttaagtttgtttatttatttactcaagcttcgtattaggctcgattaa |
42087212 |
T |
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| Q |
508 |
ttaaatgagttgaacttaagcttacccgtgtgattannnnnnncctcgcaggttcagaagctaaattat |
576 |
Q |
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| T |
42087211 |
ttaaatgagttgaacttaagcttaaccgtgtgattttttttttcctcgcaggttcagaagctaagttat |
42087143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 39342692 - 39342750
Alignment:
| Q |
168 |
cttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaa |
226 |
Q |
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| T |
39342692 |
cttgggttgcagcctagacaagtagctgtttggttccaaaacaggagagcaagatggaa |
39342750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 9379021 - 9379118
Alignment:
| Q |
135 |
gaaccaaggaagaagatgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaaatcaaa |
232 |
Q |
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| T |
9379021 |
gaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaa |
9379118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 214
Target Start/End: Complemental strand, 24692455 - 24692391
Alignment:
| Q |
150 |
atgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaag |
214 |
Q |
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| T |
24692455 |
atgcagctagcaagagctcttggattgcagccaagacaaattgctatatggtttcaaaacagaag |
24692391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 16763066 - 16762999
Alignment:
| Q |
153 |
caacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaag |
220 |
Q |
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| T |
16763066 |
caacttgcaaaagagcttggtttgcaaccaagacaagttgctatatggtttcaaaacagaagggcaag |
16762999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 17181983 - 17181907
Alignment:
| Q |
150 |
atgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaa |
226 |
Q |
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| T |
17181983 |
atgcagcttgcaagagctcttaacttgcaacctagacaagttgctatatggtttcaaaatagaagggcaagatggaa |
17181907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 2342836 - 2342778
Alignment:
| Q |
174 |
ttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaaatcaaa |
232 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| |||| |
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| T |
2342836 |
ttgcagcctagacaaattgctatatggtttcagaatagaagagcaagatgcaaaacaaa |
2342778 |
T |
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