View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13717_low_8 (Length: 472)
Name: NF13717_low_8
Description: NF13717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13717_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 3126147 - 3126569
Alignment:
| Q |
18 |
agacctgtttgagctcaattttgagttcttgacgaactcgttccatgagtgacctttcagattcagtaggaagtaatggaccaagtcccatcatgtcatg |
117 |
Q |
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| T |
3126147 |
agacctgtttgagctcaattttgagttcttgacgaactcgttccatgagtgacctttcagattcagtaggaagtaatggaccaagtcccatcatgtcatg |
3126246 |
T |
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| Q |
118 |
atcaccaccaccaccacttgactgattatctaaaccataatccatctgcaattgttcatcttcatcatccgacattgtcgcaccacttccttctcccaaa |
217 |
Q |
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| T |
3126247 |
atcaccaccaccaccacttgactgattatctaaaccataatccatctgcaattgttcatcttcatcatccgacattgtcgcaccacttccttctcccaaa |
3126346 |
T |
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| Q |
218 |
ctcactcctgaaataaattcaagactacatttactcctgtgtttaacatgcagatacatatggacaacccatatcaaattttaattatggaactgaaata |
317 |
Q |
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| T |
3126347 |
ctcactcctgaaataaattcaatactacatttactcctgtgtttaacatgcagatacatatggacaacccatatcaaattttaattatggaactgaaata |
3126446 |
T |
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| Q |
318 |
aaaccaagggaatttagctgcatacgcataaatcttagctagacaaaatttaactgaaatttctcattagggatagttatttaagggatacaaaaaatca |
417 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126447 |
aaaccaagggaatttagctacatacgcataaatcttagctagacaaaatttaactgaaatttctcattagggatagttatttaagggatacaaaaaatca |
3126546 |
T |
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| Q |
418 |
gtcacaaatgatttactaaacaa |
440 |
Q |
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| T |
3126547 |
gtcacaaatgatttactaaacaa |
3126569 |
T |
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