View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13718_high_6 (Length: 285)
Name: NF13718_high_6
Description: NF13718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13718_high_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 51528140 - 51527859
Alignment:
| Q |
5 |
atggacatcatcacaaaaatctaaacattgatgcaatttactaatttctatcaagattcatttggaagcgtcgtgaccaaattaatgtctttaaaatatc |
104 |
Q |
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| T |
51528140 |
atggacaccatcacaaaaatctaaacattgatgcaatttactaatttctatcaagattcatttggaagcgtcgtgaccaaattaatgtctttaaaatatc |
51528041 |
T |
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| Q |
105 |
aatgaaaaaatgtt-agtaccttctgctttcagtaagtactaactactaagtagtatcttcctaaggtatcaagcagaagaaaggttccatctgcttcca |
203 |
Q |
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| T |
51528040 |
aatgaaaaaatatttagtaccttctgctttcagtaagtactaactactaagtagtatcttcctaaggtatcaagcagaagaaaggttccatctgcttcca |
51527941 |
T |
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| Q |
204 |
aaatgggctgcagaaggaatagactgcagtactaagaatactttaattaattactctaggaagcaaaggtgtataggctagc |
285 |
Q |
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| T |
51527940 |
aaatgggctgcagaaggaatagactgcagtactaagaatactttaattaattactctaggaagcaaaggggtataggctagc |
51527859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 52233165 - 52233263
Alignment:
| Q |
151 |
taagtagtatcttcctaaggtatcaagcagaagaaaggttccatctgcttccaaaatgggctgcagaaggaatagactgcagtactaagaatactttaa |
249 |
Q |
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| T |
52233165 |
taagtaatatcttcctcgggtatcatactaaagaaaggttccatctgcttccaaaatgggctggagaaggagtaggctgcagtaataaaaatgctttaa |
52233263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 52232983 - 52233060
Alignment:
| Q |
5 |
atggacatcatcacaaaaatctaaa-cattgatgcaatttactaatttctatcaagattcatttggaagcgtcgtgac |
81 |
Q |
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| T |
52232983 |
atggacaccatcacaaaaatctaaagcatcgctgcaatgtactaatttccatcataattcctatggaagtgtcgtgac |
52233060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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