View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13718_low_1 (Length: 593)
Name: NF13718_low_1
Description: NF13718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13718_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 37303967 - 37304560
Alignment:
| Q |
1 |
tatcctatcaatctgaat-ttaacaccaaaattaaagaaggttaaaatatagttaatcatgaagaagatttttt-atcatgatagagatagaataacaat |
98 |
Q |
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| T |
37303967 |
tatcctatcaatctgaaaattaacaccaaaattaaagaaggataaaatatagttgatcatgaagaagatttttttatcatgatagagatagaataacaat |
37304066 |
T |
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| Q |
99 |
aggtcaatcactttaaaacgaaattttgataaaaacaaagtcgctttgcaaattttatactttagtgaattacaattaaattaatatgattgatgcgata |
198 |
Q |
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| T |
37304067 |
aggtcaatcactttaaaacgaaattttgataaaaacaaagtagctttgcaaattttatactttagtgaattacaattaaattaatatgattgatgcgata |
37304166 |
T |
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| Q |
199 |
ttaactttggtcgtggagacaacaaaatctgcggtgattttaatctcatgcnnnnnnngaacgccgaaaaatataggtgttgatcccctacaatagcgtt |
298 |
Q |
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| T |
37304167 |
ttaactttggtcgtggagacaacaaaatctgcattgattttaatctcatactttttcc-aacgccgaaaaatataggtttcgatcccctacaatagtgtt |
37304265 |
T |
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| Q |
299 |
gctgcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaacccgattggtctcgatatac |
398 |
Q |
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| T |
37304266 |
gttgcaccgtgcaactgttgtaggggatccaagacctcgaatgtatttgttatctcattttttaaccgcatttagttcaaccagattggtctcgatatat |
37304365 |
T |
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| Q |
399 |
gtgtctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatg |
498 |
Q |
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| T |
37304366 |
gtgtctatcaatcgcaccataaacttggtgtagtttttgaatcaatgcgatgaatgtatacctcttctcgaaggcgagaattttcaatcctcaagtgatg |
37304465 |
T |
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| Q |
499 |
ttcatcaaacgacatctctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgc |
593 |
Q |
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| T |
37304466 |
ttcatcaaacgacatttctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaacctcatgttatcagcgc |
37304560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 478 - 591
Target Start/End: Complemental strand, 16825536 - 16825423
Alignment:
| Q |
478 |
attttcaatcctcaagtgatgttcatcaaacgacatctctccgatagcagttggtccaccacaattaggacaagaagcattacttagagcttctctaaac |
577 |
Q |
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|||||||| |||||| |||||||||||||| ||||| || || ||||| ||||| ||||||||||||||||| |||||||| || |||||||||||| || |
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| T |
16825536 |
attttcaagcctcaaatgatgttcatcaaatgacatttcacctatagctgttggaccaccacaattaggacatgaagcattgctaagagcttctctatac |
16825437 |
T |
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| Q |
578 |
ctcatgttatcagc |
591 |
Q |
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| T |
16825436 |
ctcatgttatcagc |
16825423 |
T |
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Back To:
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