View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13718_low_11 (Length: 221)
Name: NF13718_low_11
Description: NF13718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13718_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 30058769 - 30058962
Alignment:
| Q |
13 |
gaatatgtacatagcaaaggttaatgaatatgcatagaggtctcctaatgcatattcaaatttctattgcgtgttaatgaattaacaagcacattattga |
112 |
Q |
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| T |
30058769 |
gaatatgtacatagcaaaggttaatgaatatgcatagaggtctcctaatgcatattcaaatttctattgcgtgttaatgaattaacaagcacattattga |
30058868 |
T |
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| Q |
113 |
gataaactaactgcatagaatgctttgtagatatgtccgaccacatagttgacattttcatctattctttgcaggagatctaattcacttatga |
206 |
Q |
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| T |
30058869 |
gataaactaactgcatagaatgctttgtagatatatccgaccacatagttgacattttcatctattctttgcaggagttctaattcacttatga |
30058962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 199
Target Start/End: Original strand, 30061174 - 30061307
Alignment:
| Q |
67 |
ttcaaatttctattgcgtgttaatgaattaacaagcacattattgagataaactaactgcatagaatgctttgtagatatgtcc-gaccacatagttgac |
165 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
30061174 |
ttcaaatttctattgcgtgttaatgaattaacaaacacaatattgagataaaataactgcatagaatgctttgtagatatttccacaccacatagttgac |
30061273 |
T |
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| Q |
166 |
attttcatctattctttgcaggagatctaattca |
199 |
Q |
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| T |
30061274 |
attttcatctattcttggtaggatttctaattca |
30061307 |
T |
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