View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13718_low_2 (Length: 543)
Name: NF13718_low_2
Description: NF13718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13718_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 4633204 - 4633714
Alignment:
| Q |
17 |
attttatagcagctgtattcaaatatggttctgtccctgaattacctcctaagcaattcatatttaaccatatagttagaacaacagagcggcaaaatgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4633204 |
attttatagcagctgtattcaaatatggttctgtccctgaatcacctcctaagcaattcatatttaaccatatagatagaacaacagagcggcaaaatgt |
4633303 |
T |
|
| Q |
117 |
agctcaactgaccaagaacttaacaacccttctaaatatgcacaaaggaagaaaaaatcaaatctgatatcatgataagtgtagttcatccaaataaatt |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4633304 |
agctccactgaccaagaacttaacaacccttctaaatatgcacaaaggaagaaaaaatcaaatctgatatcatgataagcgtagttcatccaaataaatt |
4633403 |
T |
|
| Q |
217 |
gtgcatttgaacaaaacatgactgtgagtggtttcaatagtgtatttcacatcaatggtgaaggttg-ttaaaagttactatctagtaaagatcaaatgt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4633404 |
gtgcatttgaacaaaacatgactgtgagtggtttcaatagtgtatttcacatcaatggtgaaggttgtttaaaagttactatctagtaaagatcaaatgt |
4633503 |
T |
|
| Q |
316 |
gaaccgattgatcttaaatctccaatatcaatcaatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaact |
415 |
Q |
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| T |
4633504 |
gaaccgattgatcttaaatctccaatatcaatcaatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaact |
4633603 |
T |
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| Q |
416 |
atgcaatgaaaattaaggatattttagtgaaattttaggaaaactcacatcataagcctcattgatcaagtgaaactgcgccccacaatctcttcctttg |
515 |
Q |
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| T |
4633604 |
atgcaatgaaaattaaggatattttagtgaaattttaggaaaactcacatcataagcttcattgatcaagtgaaactgcgccccacaatctcttcctttg |
4633703 |
T |
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| Q |
516 |
cactcacctgg |
526 |
Q |
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|||||| |||| |
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| T |
4633704 |
cactcatctgg |
4633714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 313 - 518
Target Start/End: Original strand, 1080711 - 1080906
Alignment:
| Q |
313 |
tgtgaaccgattgatcttaaatctccaatatcaatcaatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaatta |
412 |
Q |
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| T |
1080711 |
tgtgaaccgattgatcttaaatctccaatatc----------catatattaaaggatctaaaaatagtaatcaacccaaacaattataacaattaaatta |
1080800 |
T |
|
| Q |
413 |
actatgcaatgaaaattaaggatattttagtgaaattttaggaaaactcacatcataagcctcattgatcaagtgaaactgcgccccacaatctcttcct |
512 |
Q |
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| T |
1080801 |
actatgcaataaaaattaaggatagttaagagaaattttaggaaaactcacatcataagcctcattgatcaagtgaaactgcaccccacaatctcttcct |
1080900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 50807888 - 50807974
Alignment:
| Q |
168 |
aaaaaatcaaatctgatatcatgata-agtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaa |
253 |
Q |
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||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
50807888 |
aaaaattcaaatctgatatcatgatatagcgtagttcatccaaataaattgtgcatttgaacaaaatatgattgtgagtggtttcaa |
50807974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 50867990 - 50867904
Alignment:
| Q |
168 |
aaaaaatcaaatctgatatcatgata-agtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaa |
253 |
Q |
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| T |
50867990 |
aaaaattcaaatctgatatcatgatatagcgtagttcatacaaataaattgtgcatttgaacaaaatatgattgtgagtggtttcaa |
50867904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 50807626 - 50807663
Alignment:
| Q |
144 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
181 |
Q |
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| T |
50807626 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
50807663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 50868251 - 50868214
Alignment:
| Q |
144 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
50868251 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
50868214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 19055544 - 19055458
Alignment:
| Q |
168 |
aaaaaatcaaatctgatatcatgata-agtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaa |
253 |
Q |
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||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
19055544 |
aaaaattcaaatctgatatcatgatatagcgtagttcatacaaataaattgtgcatttgaacaaaatatgattgtgagtggtttcaa |
19055458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 19055807 - 19055770
Alignment:
| Q |
144 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19055807 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
19055770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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