View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13718_low_4 (Length: 414)

Name: NF13718_low_4
Description: NF13718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13718_low_4
NF13718_low_4
[»] chr1 (11 HSPs)
chr1 (1-400)||(27433095-27433495)
chr1 (163-400)||(27208015-27208246)
chr1 (246-396)||(27455247-27455396)
chr1 (5-243)||(27443128-27443363)
chr1 (245-320)||(20952777-20952851)
chr1 (9-279)||(27221442-27221707)
chr1 (127-279)||(27215480-27215633)
chr1 (362-400)||(27215386-27215424)
chr1 (362-400)||(27221348-27221386)
chr1 (358-396)||(27410269-27410307)
chr1 (362-400)||(27443477-27443515)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 27433495 - 27433095
Alignment:
Q  1 atgaataccattcgttgaattaagattcaaaccatccatagtaggctatatatatgtcaagaaacagag--caatttcatcaatcactaaacagaaaaac 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||||||||||||    
T  27433495 atgaataccattcgttgaattaagattcaaaccatccatagtaggctatatatatgtcaagaagcagagagcaatttcatcaatcaccaaacagaaaaac 27433396  T
Q  99 tacaattgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatcaagtcatatccaaaatgaagaacacccatgttgctttatgc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27433395 tacaattgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatcaagtcatatccaaaatgaagaacacccatgttgctttatgc 27433296  T
Q  199 tttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagcttatttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27433295 tttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagctta-ttt 27433197  T
Q  299 tattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgtatgcagtggttggaggagctaaggtgacattcacaa 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27433196 tattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgtatgcagcggttggaggagctaaggtgacattcacaa 27433097  T
Q  399 at 400  Q
    ||    
T  27433096 at 27433095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 163 - 400
Target Start/End: Complemental strand, 27208246 - 27208015
Alignment:
Q  163 atatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatggtaatatatatcagtactcattcaactacattaattttc 262  Q
    |||||||||||||||  || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    |||||||||||||||    
T  27208246 atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggta-tatatatcagtactca----actacattaattttc 27208152  T
Q  263 catatagttaataaattaattcatttagcttatttttattcctcttcatgtggttaataaattcatttgctcttctaatatgaacgtattttgcatttgt 362  Q
    ||||||||||||  |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27208151 catatagttaatccattaattcatttagcttagttt-atttctcttcatgtggttaataaattcatttgctcttctaatatgaacgtatttttcatttgt 27208053  T
Q  363 atgcagtggttggaggagctaaggtgacattcacaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27208052 atgcagtggttggaggagctaaggtgacattcacaaat 27208015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 246 - 396
Target Start/End: Complemental strand, 27455396 - 27455247
Alignment:
Q  246 caactacattaattttccatatagttaataaattaattcatttagcttatttttattcctcttcatgtggttaataaattcatttgctcttctaatatga 345  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||  |||||| |    
T  27455396 caactacattaattttccatatagtaaatcaattaattcatttagcttagttt-attgctcttcatgtggttaataaattcatttgctctgataatataa 27455298  T
Q  346 acgtattttgcatttgtatgcagtggttggaggagctaaggtgacattcac 396  Q
    || |||||||||||| ||  |||| ||||||||||||||||||||||||||    
T  27455297 acatattttgcatttctaatcagtagttggaggagctaaggtgacattcac 27455247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 27443128 - 27443363
Alignment:
Q  5 ataccattcgttgaattaagattcaaaccatccatagtag---gctatatat--atgtcaagaaacagag--caatttcatcaatcact---aaacagaa 94  Q
    |||||||||||||||||||||||||||||||| |||| ||   |||||||||  |||||| ||| |||||  ||| ||||||||||||    |||||| |    
T  27443128 ataccattcgttgaattaagattcaaaccatcgatagaagaaggctatatatttatgtcatgaagcagagaacaacttcatcaatcaccttcaaacagca 27443227  T
Q  95 aaactacaattgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatcaagtcatatccaaaatgaagaacacccatgttgcttt 194  Q
    || ||||||| |||||||||||||           |||||||||||||||||||||||| |||||| ||||||||||||||  | ||| | ||||||| |    
T  27443228 aa-ctacaatcgaaagagaaaata-----------ttcacaagcctgcaaaacaagattcatcaagccatatccaaaatgacaagcactcgtgttgctct 27443315  T
Q  195 atgctttagcttggcattcctcttctatggtaatatatatcagtactca 243  Q
    |||| |||| || |||||||||||||||||| |||||||||| ||||||    
T  27443316 atgccttagttttgcattcctcttctatggt-atatatatcactactca 27443363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 20952851 - 20952777
Alignment:
Q  245 tcaactacattaattttccatatagttaataaattaattcatttagcttatttttattcctcttcatgtggttaat 320  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||    
T  20952851 tcaactacactaattttccatatagttaataaattaattcatttagctta-gtttatccctcttcatgcggttaat 20952777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 27221707 - 27221442
Alignment:
Q  9 cattcgttgaattaagattcaaaccatcc-atagtaggctatatatatgtcaagaaacagag--caatttcatcaatcact---aaacagaaaaactaca 102  Q
    |||||||||||||| ||||||| |||||  |||| |  |||||||||||||| ||| |||||  ||| |||||||||||||   |||||| ||| |||||    
T  27221707 cattcgttgaattacgattcaacccatcggatagaaatctatatatatgtcacgaagcagagaacaacttcatcaatcacttacaaacagcaaa-ctaca 27221609  T
Q  103 attgaaagagaaaatattgcaccaatattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctt 200  Q
    || |||||||||||           |||||||||||||||||||||||||| |||  ||| ||||||||||||||  | |||||  |||||| ||||| |    
T  27221608 atcgaaagagaaaa-----------tattcacaagcctgcaaaacaagattcatcaaaagccatatccaaaatgacaagcacccgcgttgctctatgcct 27221520  T
Q  201 tagcttggcattcctcttctatggta---atatatatcagtactcattcaactacattaattttccatatagttaataaatt 279  Q
    ||| || |||||||||||||||||||   | |||||||| ||  |||  |||||||||||||||||||||| ||||| ||||    
T  27221519 tagttttgcattcctcttctatggtacgtacatatatcaata--cat--aactacattaattttccatataattaatcaatt 27221442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 27215633 - 27215480
Alignment:
Q  127 atattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatgg 224  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||  | ||||| ||||||| | ||| |||| || |||||||||||||| ||    
T  27215633 atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg 27215534  T
Q  225 ta---atatatatcagtactcattcaactacattaattttccatatagttaataaatt 279  Q
    ||   | |||||||| ||  |||  |||||||||||||||||||||| ||||| ||||    
T  27215533 tacgtacatatatcaata--cat--aactacattaattttccatataattaatcaatt 27215480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 27215424 - 27215386
Alignment:
Q  362 tatgcagtggttggaggagctaaggtgacattcacaaat 400  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27215424 tatgcagtggttggaggagctaaggtgacgttcacaaat 27215386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 27221386 - 27221348
Alignment:
Q  362 tatgcagtggttggaggagctaaggtgacattcacaaat 400  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  27221386 tatgcagtggttggaggagctaaggtgactttcacaaat 27221348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 396
Target Start/End: Complemental strand, 27410307 - 27410269
Alignment:
Q  358 tttgtatgcagtggttggaggagctaaggtgacattcac 396  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  27410307 tttgtatgcagtggttggaggagccaaggtgacattcac 27410269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Original strand, 27443477 - 27443515
Alignment:
Q  362 tatgcagtggttggaggagctaaggtgacattcacaaat 400  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  27443477 tatgcagttgttggaggagctaaggtgacgttcacaaat 27443515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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