View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13718_low_9 (Length: 248)
Name: NF13718_low_9
Description: NF13718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13718_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 34710458 - 34710696
Alignment:
| Q |
11 |
aatatatagttagtaacttattcgtatttaattccgagtcatgaacctttatgacatcgagttggagagtcaaagattaaaatgacaatttactnnnnnn |
110 |
Q |
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| T |
34710458 |
aatatagagttagtaacttatttgtatttaattccgaatcagaaacatttatgacatcgagttggagagtcaaagactaaaatgacaatttactaaaaaa |
34710557 |
T |
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| Q |
111 |
n-cacattttagtcattcttttcatttttgtttttaactcactactatcgcgaggcaataatatttaaactagaaccacttatcacgaggatttaaacta |
209 |
Q |
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| T |
34710558 |
aacacattttagtcattcttttcatttttgtttttaactcactactatcgcgaggcaataatatttaaactagaaccacttatcacgaggatttaaacta |
34710657 |
T |
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| Q |
210 |
gaataaacagaaacgacaatatgtggtatttttaaacta |
248 |
Q |
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| T |
34710658 |
gaataaacagaaacgacaatatgtggtatttttaaacta |
34710696 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 1001990 - 1002026
Alignment:
| Q |
68 |
cgagttggagagtcaaagattaaaatgacaatttact |
104 |
Q |
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| T |
1001990 |
cgagttggaaagtcaaagattaaaatgaaaatttact |
1002026 |
T |
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