View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13719_high_6 (Length: 309)
Name: NF13719_high_6
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_high_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 33926868 - 33927154
Alignment:
| Q |
8 |
aagaatattaaatgtcggttctttggatcttacctaaaaatagtttgatgagtcttaattagattccaaatggtatgctagtatattgcatatatatccc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33926868 |
aagaatattaaatgtcggttctttagatcttacctaaaaatagtttgatgagtcttaattagattccaaatggtatgctagtatattgcatatatatccc |
33926967 |
T |
|
| Q |
108 |
ttatagtgactaaatttaaaaatgtccttcattagtttgtctaaattattgatagaannnnnnnacaatgatgataaaaatatggcatg-tttttcattt |
206 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33926968 |
ttatagtgactaaattt-aaaatgtccttcattagtttgtctaaattattgatagaatttttttacaatgatgataaaaatatggcatgttttttcattt |
33927066 |
T |
|
| Q |
207 |
tgatgtattcgactaatttagtagtaattaataattctattatgaattttcctaattgtatgaaaagttaagcca-taacgtttattg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33927067 |
tgatgtattcgactaatttagtagtaattaataattcaattatgaattttcctaattgtatgaaaagttaagccagcaacgtttattg |
33927154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University