View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13719_low_10 (Length: 238)
Name: NF13719_low_10
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_10 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 13398566 - 13398782
Alignment:
| Q |
17 |
actgccaaggtctgggtttccttcctctcttaagttactgagcattagccactgtccgctgttaaaatcaaggtatgccactaagagaaatgatcatctg |
116 |
Q |
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| T |
13398566 |
actgccaaggtctgggtttccttcctctcttaagttactgagcattagccactgtccgctgttaaaatcaaggtatgccactaagagaaatgatcatttg |
13398665 |
T |
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| Q |
117 |
tccaagatctctcacatccctgtcataaaaataaatggtaaagtgacaatatgagccatgggatagggaaggaagaatctcacttccatttcaggtatgt |
216 |
Q |
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| T |
13398666 |
tccaagatctctcacatccctgtcgtaaaaataaatggtatagtgacaatatgagccatcgga-----aaggaagaatctctcttccatttcaggtatgt |
13398760 |
T |
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| Q |
217 |
ttttcttttatgtcatcctcca |
238 |
Q |
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| T |
13398761 |
ttttcttttatgtaatcgtcca |
13398782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 10944972 - 10944851
Alignment:
| Q |
110 |
tcatctgtccaagatctctcacatccctgtcataaaaataaatggtaaagtgacaatatgagccatgggatagggaaggaagaatctcacttccatttca |
209 |
Q |
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| T |
10944972 |
tcatgtgtccaagatcgctcacatgcctgtcataaaaataaattatgaagtgataatatgagccatggcaaaggaaatgaagaatcacacttccatttca |
10944873 |
T |
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| Q |
210 |
ggta-tgtttttcttttatgtc |
230 |
Q |
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| T |
10944872 |
ggtacattttttcttttatgtc |
10944851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 11778926 - 11778871
Alignment:
| Q |
116 |
gtccaagatctctcacatccctgtcataaaaataaatggtaaagtgacaatatgag |
171 |
Q |
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| T |
11778926 |
gtccaaaatcgctcacatccctgtcatagaaataaatgaaaaagtcacaatatgag |
11778871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 10086300 - 10086360
Alignment:
| Q |
116 |
gtccaagatctctcacatccctgtcataaaaataaatggtaaagtgacaatatgagccatg |
176 |
Q |
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| T |
10086300 |
gtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatgagccatg |
10086360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 10193220 - 10193280
Alignment:
| Q |
116 |
gtccaagatctctcacatccctgtcataaaaataaatggtaaagtgacaatatgagccatg |
176 |
Q |
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| T |
10193220 |
gtccaaaatttctctcattcctgtcataaaaataaatggcgaaatcacaatatgagccatg |
10193280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 11157005 - 11156961
Alignment:
| Q |
126 |
tctcacatccctgtcataaaaataaatggtaaagtgacaatatga |
170 |
Q |
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| T |
11157005 |
tctcatatccctgtgataaaaataaatgacaaagtgacaatatga |
11156961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 828992 - 829185
Alignment:
| Q |
36 |
ccttcctctcttaagttactgagcattagccactgtccgctgttaaaatcaaggtatgccactaagagaaatgatcatctgtccaagatctctcacatcc |
135 |
Q |
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| T |
828992 |
ccttcatctcttaagctattgagcattaggcattgccctatgttaaaagcatggtatgaaactcagagaagggtatatgtgtccaagattccacacttcc |
829091 |
T |
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| Q |
136 |
ctgtcataaaaataaatggtaaagtgacaatatgagccatgggatagggaaggaagaatctcacttccatttcaggtatgtttttcttttatgt |
229 |
Q |
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| T |
829092 |
ctgtcgtaaaaatagaccatgaagttacactatgagccttgggaaagggaaggaatagttgcactccaatttcaggtatgtttttattttatgt |
829185 |
T |
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