View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13719_low_11 (Length: 230)

Name: NF13719_low_11
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13719_low_11
NF13719_low_11
[»] chr2 (20 HSPs)
chr2 (19-227)||(41843480-41843686)
chr2 (142-230)||(20242667-20242750)
chr2 (142-230)||(34784911-34785005)
chr2 (142-207)||(24009349-24009414)
chr2 (141-206)||(36096303-36096368)
chr2 (142-204)||(26769579-26769641)
chr2 (142-230)||(974783-974870)
chr2 (147-207)||(12224277-12224337)
chr2 (144-207)||(2438661-2438724)
chr2 (155-230)||(14996172-14996246)
chr2 (142-230)||(35056904-35056998)
chr2 (142-207)||(22084756-22084824)
chr2 (141-207)||(38117098-38117164)
chr2 (142-207)||(11223793-11223857)
chr2 (142-207)||(15972927-15972992)
chr2 (142-207)||(37419808-37419873)
chr2 (142-207)||(37559031-37559096)
chr2 (142-207)||(42511322-42511387)
chr2 (155-207)||(19942319-19942371)
chr2 (143-207)||(28596523-28596587)
[»] chr3 (19 HSPs)
chr3 (139-229)||(35222975-35223060)
chr3 (129-207)||(25064972-25065050)
chr3 (142-230)||(13845465-13845548)
chr3 (142-230)||(27505282-27505370)
chr3 (141-230)||(8039763-8039858)
chr3 (142-207)||(20503519-20503584)
chr3 (142-207)||(55401129-55401194)
chr3 (143-230)||(10690193-10690285)
chr3 (142-230)||(40993275-40993358)
chr3 (147-230)||(2941594-2941672)
chr3 (143-213)||(15864880-15864950)
chr3 (172-230)||(29508480-29508539)
chr3 (157-207)||(10955006-10955056)
chr3 (140-206)||(34185050-34185116)
chr3 (142-204)||(41961579-41961641)
chr3 (142-207)||(7171555-7171620)
chr3 (142-207)||(15796223-15796288)
chr3 (155-207)||(4987233-4987285)
chr3 (141-197)||(21211358-21211414)
[»] chr1 (19 HSPs)
chr1 (144-230)||(1486646-1486732)
chr1 (142-207)||(41597410-41597475)
chr1 (143-204)||(12919002-12919063)
chr1 (142-207)||(25934681-25934746)
chr1 (143-203)||(10577676-10577736)
chr1 (139-207)||(47989562-47989630)
chr1 (142-196)||(9690213-9690267)
chr1 (142-207)||(32461393-32461458)
chr1 (142-207)||(37598885-37598950)
chr1 (143-191)||(45534131-45534179)
chr1 (139-207)||(46348320-46348388)
chr1 (143-206)||(6414932-6414995)
chr1 (142-205)||(6427531-6427594)
chr1 (142-207)||(9828109-9828174)
chr1 (142-191)||(15765828-15765877)
chr1 (142-207)||(18337383-18337448)
chr1 (142-230)||(19562556-19562644)
chr1 (142-207)||(40917814-40917879)
chr1 (171-207)||(31015091-31015127)
[»] chr6 (17 HSPs)
chr6 (142-230)||(17327590-17327678)
chr6 (144-230)||(12696360-12696446)
chr6 (141-230)||(16488518-16488613)
chr6 (142-230)||(18367872-18367966)
chr6 (155-230)||(24138462-24138537)
chr6 (142-229)||(33001229-33001311)
chr6 (141-207)||(28152152-28152218)
chr6 (142-207)||(34595188-34595253)
chr6 (142-207)||(3209453-3209518)
chr6 (142-207)||(16766762-16766827)
chr6 (142-206)||(13789209-13789273)
chr6 (142-206)||(13797828-13797892)
chr6 (140-207)||(24645535-24645602)
chr6 (142-204)||(8365448-8365510)
chr6 (142-191)||(4388150-4388199)
chr6 (142-207)||(10339054-10339119)
chr6 (143-207)||(17841530-17841594)
[»] chr8 (16 HSPs)
chr8 (139-224)||(16641906-16641991)
chr8 (141-207)||(34450960-34451026)
chr8 (142-230)||(26902104-26902198)
chr8 (142-207)||(8343381-8343446)
chr8 (143-230)||(43737752-43737834)
chr8 (144-207)||(926730-926793)
chr8 (142-200)||(18964251-18964309)
chr8 (142-207)||(36450694-36450759)
chr8 (142-218)||(24858059-24858135)
chr8 (144-207)||(3025605-3025668)
chr8 (142-207)||(3951476-3951541)
chr8 (142-191)||(8343037-8343086)
chr8 (142-207)||(22652041-22652106)
chr8 (142-207)||(29510233-29510298)
chr8 (171-207)||(5813646-5813682)
chr8 (143-207)||(29447040-29447104)
[»] chr7 (18 HSPs)
chr7 (140-230)||(32093952-32094043)
chr7 (143-225)||(20545185-20545267)
chr7 (142-218)||(5409771-5409847)
chr7 (142-230)||(18212973-18213056)
chr7 (142-230)||(1433490-1433578)
chr7 (142-218)||(43027404-43027480)
chr7 (142-229)||(21138931-21139018)
chr7 (142-227)||(9778539-9778624)
chr7 (155-230)||(13770727-13770802)
chr7 (145-207)||(39138498-39138560)
chr7 (142-206)||(21864863-21864927)
chr7 (140-230)||(5835283-5835368)
chr7 (173-227)||(7758361-7758415)
chr7 (142-207)||(598262-598327)
chr7 (201-230)||(15902858-15902887)
chr7 (142-207)||(24339707-24339772)
chr7 (145-229)||(2533761-2533844)
chr7 (139-191)||(6490786-6490838)
[»] chr5 (18 HSPs)
chr5 (140-230)||(30098976-30099061)
chr5 (141-230)||(21814297-21814392)
chr5 (143-230)||(6401534-6401627)
chr5 (142-230)||(14873553-14873641)
chr5 (142-206)||(21576685-21576749)
chr5 (142-207)||(27932289-27932354)
chr5 (142-230)||(39205916-39206004)
chr5 (155-230)||(23015937-23016012)
chr5 (142-229)||(31084360-31084447)
chr5 (144-230)||(43001836-43001922)
chr5 (142-207)||(28588614-28588679)
chr5 (195-229)||(38749551-38749585)
chr5 (142-207)||(21522815-21522880)
chr5 (142-207)||(21533381-21533446)
chr5 (142-207)||(42029806-42029871)
chr5 (171-207)||(21542095-21542131)
chr5 (147-207)||(26312823-26312883)
chr5 (139-207)||(30098391-30098459)
[»] chr4 (17 HSPs)
chr4 (141-207)||(5414100-5414166)
chr4 (141-207)||(23292925-23292991)
chr4 (142-207)||(19097835-19097899)
chr4 (142-230)||(36635360-36635449)
chr4 (141-230)||(46083919-46084014)
chr4 (143-230)||(3947702-3947789)
chr4 (143-230)||(30982808-30982901)
chr4 (142-202)||(19482738-19482798)
chr4 (142-202)||(29205527-29205587)
chr4 (155-207)||(49431080-49431132)
chr4 (141-206)||(5654502-5654567)
chr4 (142-207)||(12895214-12895279)
chr4 (142-207)||(34306744-34306809)
chr4 (142-207)||(47264051-47264116)
chr4 (142-190)||(16184902-16184950)
chr4 (142-229)||(18513175-18513263)
chr4 (140-208)||(28964186-28964254)
[»] scaffold0227 (1 HSPs)
scaffold0227 (142-187)||(15045-15090)
[»] scaffold0003 (1 HSPs)
scaffold0003 (142-207)||(241659-241724)
[»] scaffold0623 (1 HSPs)
scaffold0623 (155-230)||(5938-6019)
[»] scaffold0171 (1 HSPs)
scaffold0171 (192-230)||(23456-23494)
[»] scaffold0083 (1 HSPs)
scaffold0083 (137-207)||(45465-45535)
[»] scaffold0050 (1 HSPs)
scaffold0050 (145-207)||(70332-70394)
[»] scaffold0512 (1 HSPs)
scaffold0512 (142-207)||(4976-5041)
[»] scaffold0019 (1 HSPs)
scaffold0019 (142-207)||(71790-71855)
[»] scaffold0652 (1 HSPs)
scaffold0652 (143-207)||(403-467)
[»] scaffold0004 (1 HSPs)
scaffold0004 (143-207)||(92876-92940)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 41843686 - 41843480
Alignment:
Q  19 gctccactgctgcagacataacaatcctccccactcgtgcacttcctaatatattggatcattacaagtttaannnnnnncttatcgttgataaaatcaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||    
T  41843686 gctccactgctgcagacataacaatcctccccactcgtgcacttcctaatatattggatcattacaagtttaatttttt--ttatcattgataaaatcaa 41843589  T
Q  119 aagttagaaaatcaaaatgaaaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacac 218  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  41843588 aagttagaaaatagaaatgaaaactatgaagcacagacactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgacacaacaccgacac 41843489  T
Q  219 atataatta 227  Q
    |||||||||    
T  41843488 atataatta 41843480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 20242667 - 20242750
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||||     ||||||||||||||||||||||    
T  20242667 ctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccg-----acaccgacacatataattacac 20242750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 34784911 - 34785005
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacac 230  Q
    |||||||||||| |||||| ||| |||| |||||||||||||||||||| |||||||||      ||||||| ||||||||||||||||||||||    
T  34784911 ctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagacaggtgtcgtgtccgataccgacacgacaccgacacatataattacac 34785005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 24009414 - 24009349
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  24009414 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacac 24009349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 36096303 - 36096368
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    ||||||||||||  |||||||| || ||| ||||||||||||||||||||||||||||||||||||    
T  36096303 actatgaagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtccgaca 36096368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 26769641 - 26769579
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga 204  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccga 26769579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 974870 - 974783
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||| |||| |  ||||| |||||||||||  ||| |||||| |||||||||| |||| |||||||||| | |||||||||    
T  974870 ctatgaagcacagacaccccccggattaagcgtgtcccgttgt-agacacatgtcgtgtccaacacgacaccgacacttgtaattacac 974783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 12224337 - 12224277
Alignment:
Q  147 aagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||||| | |||| | ||||||||| ||||| ||||||| |||||||||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacac 12224277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 2438661 - 2438724
Alignment:
Q  144 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||  |||||| |||||| | ||||||||| ||||| |||| ||||||||||||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacac 2438724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 14996172 - 14996246
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||| |||||| | |||||| || ||||||||||||||| ||||||||||  |||||||||| | |||||||||    
T  14996172 acactcctcggattaggcgtgttccggtgtcagacacgtgt-gtgtccgacaagacaccgacacttgtaattacac 14996246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 35056998 - 35056904
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| || ||| | ||||||  ||||||| |||||||||||||||||      |||| ||||||||||||||||||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacac 35056904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 22084756 - 22084824
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtg---tcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| |||||| |||||| | ||||||||| |||   |||||||||||| |||||||||||    
T  22084756 ctatgaagcacagacactcatcggattaggcgtgtcccggtggtgtcagacacgtgttgtgtccgacac 22084824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 38117098 - 38117164
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||  |||| | |||||| | ||||||||| ||||| ||||||||| |||||||||||    
T  38117098 actatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 38117164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 11223793 - 11223857
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| || ||| | ||||||||| |||||||||| ||||||||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca-gtgtcgtgtccgacac 11223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 15972992 - 15972927
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  ||| ||||||||| | | ||||||| | ||| |||||||||||||||||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacac 15972927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 37419873 - 37419808
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||  |||||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacac 37419808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 37559096 - 37559031
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| |||||||| || ||||| ||||||||||  |||||||||    
T  37559096 ctatgaagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacac 37559031  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 42511322 - 42511387
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||||||| |||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacacgtgttgtgtccgacac 42511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 19942371 - 19942319
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||| |||||| | ||||||||| ||||||||||| || ||||||||||||    
T  19942371 acactcctcggattaggcgtgtcccggtgtcagacacatgccgtgtccgacac 19942319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 28596587 - 28596523
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||  |||||| |||||| | | ||||||  ||||| |||||||||||||||||||||    
T  28596587 tatgaagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacac 28596523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 35223060 - 35222975
Alignment:
Q  139 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattaca 229  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||     |||||||||||||||||||||    
T  35223060 aaactatgaagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccg-----acaccgacacatataattaca 35222975  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 25065050 - 25064972
Alignment:
Q  129 atcaaaatgaaaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||| || ||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  25065050 atcaatataaaaactatggagcacgaacactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacac 25064972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 13845465 - 13845548
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| | |||||| ||||||| ||||||||||||||| |||||||||     ||||||||||||||||||||||    
T  13845465 ctatgaagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccg-----acaccgacacatataattacac 13845548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 27505370 - 27505282
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| |||||| | || |||||| ||||| ||||||||||||||| ||||| |||||||||| | |||||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacacgacaccgacacttgtaattacac 27505282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 8039763 - 8039858
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacac 230  Q
    ||||||||||||| | ||||||||||| ||||||||||| ||||| |||| || || |||      ||||||| ||||||||||||||||||||||    
T  8039763 actatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacac 8039858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 20503584 - 20503519
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | ||||||||| |||||||||| ||||||||||| ||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacac 20503519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 55401194 - 55401129
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | ||||||| | ||||| |||||||||||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac 55401129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 10690193 - 10690285
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac-----aacaccgacacatataattacac 230  Q
    ||||||||||| ||| || |||||| | | ||||| ||||||||||||||||| |||||||||||     || ||||||| ||||||||||||    
T  10690193 tatgaagcacatacattcctcggattaggtgtgtcgccgtgtcagacacgtgttgtgtccgacactaaacaataccgacaaatataattacac 10690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 40993275 - 40993358
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||   |||||| |||||| | ||||||||| ||||| |||| ||||||||||||     ||||||||||||||||||||||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccg-----acaccgacacatataattacac 40993358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 2941672 - 2941594
Alignment:
Q  147 aagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||| |  | |||||| || | ||||| ||||||||||||||||||||||     ||||||||||||||||||||||    
T  2941672 aagcacaaacatttcttggataaggcatatccccatgtcagacacgtgtcgtgtccg-----acaccgacacatataattacac 2941594  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 15864950 - 15864880
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtc-gtgtccgacacaacacc 213  Q
    ||||||||||  |||||||| |||| | ||||||||| |||||||||||||||| ||||||||||| |||||    
T  15864950 tatgaagcacggacactctttggattaggcgtgtccc-gtgtcagacacgtgtcggtgtccgacacgacacc 15864880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 29508539 - 29508480
Alignment:
Q  172 cgtgtccccgtgtcagacacgtgtcgtgtccgacac-aacaccgacacatataattacac 230  Q
    |||||||| ||||| |||  |||||||||||||||| |||| ||||||||||||||||||    
T  29508539 cgtgtcccggtgtcggacgtgtgtcgtgtccgacaccaacatcgacacatataattacac 29508480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 10955056 - 10955006
Alignment:
Q  157 actcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||| |||||| | ||||||||| ||||| |||||||||||||||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacac 10955006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 34185050 - 34185116
Alignment:
Q  140 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    |||||||||||||  |||||| |||||| | ||||||||| ||||| ||||| |||| |||||||||    
T  34185050 aactatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtcttgtccgaca 34185116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 41961579 - 41961641
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga 204  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| ||||||||||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccga 41961641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 7171620 - 7171555
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||| | |||||| | |||| | ||||||| | ||||| |||||||||||||||||||||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacac 7171555  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 15796223 - 15796288
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||| ||||||||| |||| | |||||| || ||||  ||||||||| |||||||||||    
T  15796223 ctatgaagcacgaacactctttggattaggcgtgttccggtgttggacacgtgttgtgtccgacac 15796288  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 4987233 - 4987285
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||| |||||| | ||||||||| ||||| |||||||||||||||| ||||    
T  4987233 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacac 4987285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 21211414 - 21211358
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcg 197  Q
    |||||||||||||||||||| |||||| | | ||||||| ||||| |||||| ||||    
T  21211414 actatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcg 21211358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 1486646 - 1486732
Alignment:
Q  144 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||| |||||| |||||| | ||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacac 1486732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 41597410 - 41597475
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||    
T  41597410 ctatgaagcacagacactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacac 41597475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 12919063 - 12919002
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga 204  Q
    |||||||||| ||||||  ||||||||  |||||||||||||||||||||||||||||||||    
T  12919063 tatgaagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtccga 12919002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 25934746 - 25934681
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| | |||||| |||| ||||||||||||||||||||||||||||||||    
T  25934746 ctatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacac 25934681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 10577676 - 10577736
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg 203  Q
    ||||||||||  |||||| | |||||| |||||||||||||||||||||| ||||||||||    
T  10577676 tatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccg 10577736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 47989630 - 47989562
Alignment:
Q  139 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||||  |||||| |||||| | |||||||||  ||||||||| ||||||||||||||||    
T  47989630 aaactatgaagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacac 47989562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 9690213 - 9690267
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtc 196  Q
    |||||||||||||||||||| ||||| | ||||||||| ||||| ||||||||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtc 9690267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 32461393 - 32461458
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||  | |||| | ||||||||| |||||||||||||||||||||||||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacac 32461458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 37598950 - 37598885
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | |||||||||  |||| |||||||||||||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacac 37598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 45534131 - 45534179
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 191  Q
    |||||||||||||||||| |||||||| |||||||||  ||||||||||    
T  45534131 tatgaagcacaaacactcctcggataaggcgtgtccctatgtcagacac 45534179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 46348320 - 46348388
Alignment:
Q  139 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||||  |||| | |||||| | ||||||| | ||||| |||||||||||||||||||||    
T  46348320 aaactatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac 46348388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 6414932 - 6414995
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    ||||||||||  |||||| |||||| ||  ||||| | ||||||||||||||||||||||||||    
T  6414932 tatgaagcacggacactcctcggatgaaatgtgtcgcggtgtcagacacgtgtcgtgtccgaca 6414995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 205
Target Start/End: Complemental strand, 6427594 - 6427531
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgac 205  Q
    |||||||||||  |||||| || ||| | ||||||||| ||||| |||||||||||||||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgtgtcgtgtccgac 6427531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 9828174 - 9828109
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||||||||||||| |||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacac 9828109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 15765877 - 15765828
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 191  Q
    |||||||||||  ||||||||||||| | ||||||||| |||||||||||    
T  15765877 ctatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 18337448 - 18337383
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | || |||||| ||||| ||||||||| |||||||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacac 18337383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 19562556 - 19562644
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca-acaccgacacatataattacac 230  Q
    ||||||||||| | ||||| |||||| | | ||||||| ||||| ||||||||| || ||||||||  ||||| ||||||||||||||||    
T  19562556 ctatgaagcacga-cactcctcggattaggtgtgtccctgtgtcggacacgtgttgtatccgacactgacacctacacatataattacac 19562644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 40917879 - 40917814
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  ||| || |||||| | ||||||||| ||||| |||||||||||||||| ||||    
T  40917879 ctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacac 40917814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 31015127 - 31015091
Alignment:
Q  171 gcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||  ||||||||||||||||||||||||||    
T  31015127 gcgtgtcccgatgtcagacacgtgtcgtgtccgacac 31015091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 17327590 - 17327678
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacac 17327678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 12696446 - 12696360
Alignment:
Q  144 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||| |||||| | |||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||| | |||||||||    
T  12696446 atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacacgacactgacacttgtaattacac 12696360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 16488518 - 16488613
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacac 230  Q
    |||||||||||| |||| || | |||||| ||||||||||||| ||||||||||||||||      ||||||| ||||||||||||||||||||||    
T  16488518 actatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacac 16488613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 18367966 - 18367872
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| | |||||| |||||||||||||||||||| |||||||||      ||||||| ||||||||||||||||||||||    
T  18367966 ctatgaagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacac 18367872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 24138537 - 24138462
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||||| | || |||| | |||||||||||||||| ||||| |||||||||||| |||||||| |||||    
T  24138537 acactcttcggattaggcatgtctctgtgtcagacacgtgtcatgtccaacacaacaccgatacatataaatacac 24138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 33001229 - 33001311
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattaca 229  Q
    ||||||||||||||||||||| |||| | |||| |  | |||||||||||||||||||||||     |||||||||||||||||||||    
T  33001229 ctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccg-----acaccgacacatataattaca 33001311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 28152218 - 28152152
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| ||||||| |||||| | || |||||| ||||| |||||||||||||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacac 28152152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 34595253 - 34595188
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | | ||||||| |||||||||||||||||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 34595188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 3209518 - 3209453
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||||||||| |||||| | ||||||||  ||||| ||| |||||||||| ||||||    
T  3209518 ctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggacgcgtgtcgtgttcgacac 3209453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 16766827 - 16766762
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  ||| ||||||||| | ||||||||| ||||| ||||||||| |||||||||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 16766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 13789273 - 13789209
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    ||||||||||| ||||||| | | |||| |||| ||||| ||||||||||||||| |||||||||    
T  13789273 ctatgaagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgaca 13789209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 13797892 - 13797828
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    ||||||||||| ||||||| | | |||| |||| ||||| ||||||||||||||| |||||||||    
T  13797892 ctatgaagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgaca 13797828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 24645602 - 24645535
Alignment:
Q  140 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||||| ||||||||||||| |  ||||||   ||||| ||||||||||||||| |||||    
T  24645602 aactatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgtgtcgtgtctgacac 24645535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 8365448 - 8365510
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccga 204  Q
    |||||||||||  | |||| |||||| | ||||||||| ||||| ||||||||||||||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccga 8365510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 4388199 - 4388150
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 191  Q
    |||||||||||| |||||  |||||||| |||||||| ||||||||||||    
T  4388199 ctatgaagcacagacacttctcggataaggcgtgtcctcgtgtcagacac 4388150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 10339054 - 10339119
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| || ||| | ||||||||| ||||| |||| ||||||||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacac 10339119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 17841530 - 17841594
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||  |||||| |||||| | ||||||| | ||||| ||||| |||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgtgtccgacac 17841594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 16641906 - 16641991
Alignment:
Q  139 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataa 224  Q
    ||||||||||||||| |||||| |||||| | | ||||||| |||| |||||| ||||||||||||||| ||||||||||||||||    
T  16641906 aaactatgaagcacagacactcctcggattaggtgtgtcccggtgttagacacatgtcgtgtccgacacgacaccgacacatataa 16641991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 34450960 - 34451026
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||  |||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  34450960 actatgaagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacac 34451026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 26902104 - 26902198
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgac------acaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| || ||||| ||||||||||||| |||||||||||||||||||||      || ||||||||||||||||||||||    
T  26902104 ctatgaagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacac 26902198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 8343446 - 8343381
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| ||||||||||||| | ||||||||| ||||| ||||||||||||||| |||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgtgtcggacac 8343381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 43737752 - 43737834
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||  |||||| | |||||| |||| |||||||||||||||| |||||||||||     ||||||||||||||||||||||    
T  43737752 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccg-----acaccgacacatataattacac 43737834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 926730 - 926793
Alignment:
Q  144 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||  |||||| ||||||||||| |||||| ||||| ||||||||||| |||||||||    
T  926730 atgaagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacac 926793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 18964309 - 18964251
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt 200  Q
    |||||||||||| |||||| |||||||| ||||||| |||||| ||||| |||||||||    
T  18964309 ctatgaagcacagacactcctcggataaggcgtgtctccgtgttagacaggtgtcgtgt 18964251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 36450694 - 36450759
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| |||||| |||||| | ||||||||  ||||| |||||| ||||||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacac 36450759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 24858135 - 24858059
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacac 218  Q
    ||||||||||||||||||| || ||| | ||||||||| | ||  ||||| ||||||||||||||| ||| ||||||    
T  24858135 ctatgaagcacaaacactcctctgattaggcgtgtcccggcgtgggacacatgtcgtgtccgacacgacaacgacac 24858059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 3025668 - 3025605
Alignment:
Q  144 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||  |||||| |||||| |  |||||| | |||||||||||||||||||||||||||    
T  3025668 atgaagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacac 3025605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 3951476 - 3951541
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  | |||| | |||| | |||||| |||||||||||||||||||||||| |||||    
T  3951476 ctatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacac 3951541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 8343086 - 8343037
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 191  Q
    |||||||||||| ||||||||||||| | ||||||||| ||||| |||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 22652106 - 22652041
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||| |||||||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacac 22652041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 29510233 - 29510298
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| | | ||||||| ||||| |||||| ||||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacac 29510298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 5813682 - 5813646
Alignment:
Q  171 gcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  5813682 gcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5813646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 29447040 - 29447104
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||  |||||| | |||| | ||||||||  ||||||||||| |||||||||||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtcagacacatgtcgtgtccgacac 29447104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 32093952 - 32094043
Alignment:
Q  140 aactatgaagcacaaacactcttcggataaagcgtgtccccg-tgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||||| ||||||| |||||| | ||||||||||| |||| ||||||||||||||||||||| |||||||||  | |||||||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacacgacaccgacatttgtaattacac 32094043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 20545185 - 20545267
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataat 225  Q
    ||||||||||| |||||| ||| || || |||||||||||||| |||| ||||||||| |||||| |||||||||||||||||    
T  20545185 tatgaagcacagacactcctcgaattaaacgtgtccccgtgtcggacatgtgtcgtgtacgacacgacaccgacacatataat 20545267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 5409771 - 5409847
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacac 218  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacac 5409847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 142 - 230
Target Start/End: Original strand, 18212973 - 18213056
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||| |||||| |||||||| |||||||||||||||||| | | ||||||||||     ||||||||||||||||||||||    
T  18212973 ctatgaagcacagacactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccg-----acaccgacacatataattacac 18213056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 1433578 - 1433490
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| |||||| |  |||||||  ||||| ||||| |||| |||||||||| ||||||||||||||||||||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacacatgtcttgtccgacacgacaccgacacatataattacac 1433490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 43027404 - 43027480
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacac 218  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||| ||||||||||||||| ||||| ||||||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacacgacaccgacac 43027480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 21138931 - 21139018
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattaca 229  Q
    ||||||||||| |||||||    ||| ||||||||||  ||||| ||||||| || |||||||||| |||||||||||||||||||||    
T  21138931 ctatgaagcacgaacactcccttgattaagcgtgtcctggtgtcggacacgtatcatgtccgacacgacaccgacacatataattaca 21139018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 9778624 - 9778539
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataatta 227  Q
    |||||||||||  |||||| | |||| | ||||||||| ||||| ||||||||| ||||||||||| |||||||||| | ||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacacgacaccgacacttgtaatta 9778539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 13770802 - 13770727
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||||| | |||||| || ||||| ||||||||| ||||||||||| ||| |||||| | |||||||||    
T  13770802 acactcttcggattaggcgtgttccggtgtcggacacgtgttgtgtccgacacgacaacgacacttgtaattacac 13770727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 39138560 - 39138498
Alignment:
Q  145 tgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||| | |||||| |||||| |||||||||||||| ||||| || |||||||||||||    
T  39138560 tgaagcacagatactcttgggataaggcgtgtccccgtgttagacatgtatcgtgtccgacac 39138498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 21864927 - 21864863
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    |||||||||||| |||||| ||| || |  |||||||| ||||| ||||||||||||||||||||    
T  21864927 ctatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacacgtgtcgtgtccgaca 21864863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 5835368 - 5835283
Alignment:
Q  140 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||| ||||| |||||||  |||||| ||||||||||| || |||||||| |||| |||| |     ||||||||||||||||||||||    
T  5835368 aactataaagcaaaaacacttctcggattaagcgtgtcccggtatcagacacatgtcatgtctg-----acaccgacacatataattacac 5835283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 7758415 - 7758361
Alignment:
Q  173 gtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataatta 227  Q
    |||||| ||| |||||||| ||| ||||||||||| ||||||||||| |||||||    
T  7758415 gtgtccacgtatcagacacatgtggtgtccgacacgacaccgacacacataatta 7758361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 598327 - 598262
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| ||||||||||||||| |||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 598262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 15902887 - 15902858
Alignment:
Q  201 ccgacacaacaccgacacatataattacac 230  Q
    ||||||||||||||||||||||||||||||    
T  15902887 ccgacacaacaccgacacatataattacac 15902858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 24339772 - 24339707
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||   ||||| |||||| | ||||||||| ||||| || ||||||||||||||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacac 24339707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 2533761 - 2533844
Alignment:
Q  145 tgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattaca 229  Q
    |||||||| ||||||| |||||| | ||||||||| | ||| || |||||| |||||  |||| |||| ||||||||||||||||    
T  2533761 tgaagcacgaacactcctcggattacgcgtgtcccggcgtcggatacgtgttgtgtcttacacgacac-gacacatataattaca 2533844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 6490838 - 6490786
Alignment:
Q  139 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacac 191  Q
    ||||||||||||||  |||||| |||||| ||||||||||| ||||| |||||    
T  6490838 aaactatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 30098976 - 30099061
Alignment:
Q  140 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||| ||||||| ||||||| | |||||| |||||||||||||||||||||||||||| ||||     ||||||||||||||||||||||    
T  30098976 aactacgaagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccg-----acaccgacacatataattacac 30099061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 21814392 - 21814297
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacac 230  Q
    |||||||||||| |||| || | |||||| ||||||||||||| |||||||||||||||||||      |||| ||||||||||||||||||||||    
T  21814392 actatgaagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacac 21814297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 6401627 - 6401534
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccg------acacaacaccgacacatataattacac 230  Q
    ||||||||||  |||||| | |||||| |||| ||||||||||||||||||||||||||||      |||| ||||||||||||||||||||||    
T  6401627 tatgaagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacac 6401534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 14873641 - 14873553
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||  ||||||||| | ||||||||  ||||||||||||||||||||||    
T  14873641 ctatgaagcacggacactcctcggattaggcgtgtcccggtgttggacacgtgttgcgtccgacatgacaccgacacatataattacac 14873553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 21576685 - 21576749
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    |||||||||||  |||||| |||||| | ||||||||| ||||||||||||||||||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgaca 21576749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 27932354 - 27932289
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||||||||| ||| || | ||||||||  ||||| |||||||||||||||||||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacac 27932289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 39206004 - 39205916
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||| | |||||| | |||| || ||| |||| ||||| | ||||||||||||| ||||| ||||| ||||||||||||||||    
T  39206004 ctatgaagcatagacactccttggattaaacgtatcccggtgtcgggcacgtgtcgtgtcggacacgacaccaacacatataattacac 39205916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 23015937 - 23016012
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||| |||||| | |||||||||  |||| ||||| |||||||||||| |||||| |||||| |||||||||||    
T  23015937 acactcctcggattaggcgtgtcccaatgtcggacacatgtcgtgtccgatacaacatcgacacctataattacac 23016012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 31084447 - 31084360
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattaca 229  Q
    ||||||| |||  |||||| |||||| | || |||||| ||||| ||||||||||||||||||||| ||| |||||| | ||||||||    
T  31084447 ctatgaaccacggacactcctcggattaggcatgtcccagtgtcggacacgtgtcgtgtccgacacgacatcgacacttgtaattaca 31084360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 43001922 - 43001836
Alignment:
Q  144 atgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||  |||||| |||||| | ||||||||  ||||  |||||||||||||||||||||| |||| |||| | |||||||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtccaggtgtttgacacgtgtcgtgtccgacacatcaccaacacttgtaattacac 43001836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 28588614 - 28588679
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||   ||||||||||||| ||||||||||  |||||||| | ||||||||||||||||    
T  28588614 ctatgaagcatggacactcttcggattaagcgtgtcctggtgtcagatatgtgtcgtgtccgacac 28588679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 38749551 - 38749585
Alignment:
Q  195 tcgtgtccgacacaacaccgacacatataattaca 229  Q
    ||||||||||||||||||| |||||||||||||||    
T  38749551 tcgtgtccgacacaacaccaacacatataattaca 38749585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 21522880 - 21522815
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||| ||||  |||||||| |||| | ||||||||| ||| | |||||||||||||||||||||    
T  21522880 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacac 21522815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 21533446 - 21533381
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||| ||||  |||||||| |||| | ||||||||| ||| | |||||||||||||||||||||    
T  21533446 ctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacac 21533381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 42029871 - 42029806
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||| ||||  |||||| |||||||| |||||||  |||| |||||| ||||||||||||||||    
T  42029871 ctatgatgcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacac 42029806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 21542131 - 21542095
Alignment:
Q  171 gcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  21542131 gcgtgtcccggtgtcggacacgtgtcgtgtccgacac 21542095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 26312883 - 26312823
Alignment:
Q  147 aagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||| |||||| |||||| | | ||||||  ||||||||||||| |||||||||||||    
T  26312883 aagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacac 26312823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 207
Target Start/End: Complemental strand, 30098459 - 30098391
Alignment:
Q  139 aaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||||  ||| || |||||| | | ||||||  ||||| |||||||||||||||||||||    
T  30098459 aaactatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 5414100 - 5414166
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||  |||||| | |||||| | ||||||| |||||||||||||||||||||||||||    
T  5414100 actatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacac 5414166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 23292925 - 23292991
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||||  |||||| |||||| | ||||||||| ||||| |||||||||||||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 23292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 19097835 - 19097899
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| |||||||| || ||| |||||||||||||||||||||||||| ||| ||||||    
T  19097835 ctatgaagcacagacactctttgg-taaggcgtgtccccgtgtcagacacgtgtcatgttcgacac 19097899  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 36635449 - 36635360
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac-aacaccgacacatataattacac 230  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||| ||| ||||||||||| |||||  ||||  ||||||||||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacgaacacatataattacac 36635360  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 46083919 - 46084014
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc------gacacaacaccgacacatataattacac 230  Q
    |||||||||||   |||||| ||  |||| ||||||||||| ||||||||||||||||||||      ||||| ||||||||||||||||||||||    
T  46083919 actatgaagcatggacactcctcttataaggcgtgtccccgcgtcagacacgtgtcgtgtccgatactgacacgacaccgacacatataattacac 46084014  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 3947702 - 3947789
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    ||||||||||  |||||| |||||| | | ||||||  ||||| ||||||||||||||||||||| |||| ||||| | |||||||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacacgacactgacacttgtaattacac 3947789  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 30982808 - 30982901
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacac 230  Q
    ||||||||||  |||||||| |||| | ||||||||| ||||| ||||||||||||||      ||||||| |||||||||| |||||||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacac 30982901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 19482798 - 19482738
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc 202  Q
    ||||||||||| ||||||| |||||| | | ||||||| ||||| ||||||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtcc 19482738  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 29205587 - 29205527
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtcc 202  Q
    ||||||||||| ||||||| |||||| | ||||||||| ||||| |||| |||||||||||    
T  29205587 ctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgtcc 29205527  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 49431132 - 49431080
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||| |||||||| ||||||||| ||||  |||||||||||||||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacac 49431080  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 5654502 - 5654567
Alignment:
Q  141 actatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgaca 206  Q
    ||||||||||||||| ||||||||||| | |||| | || ||||| || |||| ||||||||||||    
T  5654502 actatgaagcacaaatactcttcggattaggcgtattccggtgtcggatacgtatcgtgtccgaca 5654567  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 12895214 - 12895279
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||| ||||||| |||||| | |||||||||  |||| || || |||||||||||||||    
T  12895214 ctatgaagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacac 12895279  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 34306744 - 34306809
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||| |||| || || ||| | ||||||| | ||||| |||||||||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac 34306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 47264116 - 47264051
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| || |||||||||| | ||||||||  |||||||||| ||||||| || |||||    
T  47264116 ctatgaagcacagacgctcttcggattaggcgtgtcctggtgtcagacatgtgtcgtatctgacac 47264051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 16184950 - 16184902
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagaca 190  Q
    ||||||||||||||||||| |||||| | ||||||||| ||||| ||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggaca 16184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 18513175 - 18513263
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcg-tgtccgacacaacaccgacacatataattaca 229  Q
    |||||||||||  |||||| || ||| | ||||||||  ||||| |||||  |||| ||||||||||||||| ||||||||| ||||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacgtcggtgtccgacacaacactgacacatatgattaca 18513263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 28964186 - 28964254
Alignment:
Q  140 aactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacaca 208  Q
    ||||||||||||   |||||| |||||| | ||||||||| ||||| || | |||||||||||||||||    
T  28964186 aactatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacaca 28964254  T

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Target: scaffold0227 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 15090 - 15045
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcag 187  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||    
T  15090 ctatgaagcacaaacactcctcggataaggcgtgtccccgtgtcag 15045  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 241724 - 241659
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||  |||||| | ||||||||| ||||| |||||||||||||||||||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 241659  T

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Target: scaffold0623 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 5938 - 6019
Alignment:
Q  155 acactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgt------ccgacacaacaccgacacatataattacac 230  Q
    |||||| | |||||| ||||||| | ||||||||||||||||||||      |||| || ||||||||||||||||||||||    
T  5938 acactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataattacac 6019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 23494 - 23456
Alignment:
Q  192 gtgtcgtgtccgacacaacaccgacacatataattacac 230  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  23494 gtgtcgtgtccgacacgacaccgacacttataattacac 23456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 45465 - 45535
Alignment:
Q  137 gaaaactatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||| |||||||||||  ||| |||| |||| | || |||| | |||||||||||||||||||||||||||    
T  45465 gaaatctatgaagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacac 45535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 70394 - 70332
Alignment:
Q  145 tgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||| ||||||| |||||| | || |||||  ||||| |||||||||||||||||||||    
T  70394 tgaagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacac 70332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 4976 - 5041
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||| |||||| |||||| | || |||| |  |||| |||||||||||||||||||||    
T  4976 ctatgaagcacagacactcctcggattaggcatgtctcaatgtcggacacgtgtcgtgtccgacac 5041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 71855 - 71790
Alignment:
Q  142 ctatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    |||||||||||  |||||| |||||| |  |||||||| ||||| ||||||||| |||||||||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacacgtgttgtgtccgacac 71790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 403 - 467
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||  |||||| |||||| | | ||||||| ||||| |||||| ||||||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacac 467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 92940 - 92876
Alignment:
Q  143 tatgaagcacaaacactcttcggataaagcgtgtccccgtgtcagacacgtgtcgtgtccgacac 207  Q
    ||||||||||  |||||| |||||| | ||||||||  ||||| |||| ||||||||||||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtccaggtgtccgacatgtgtcgtgtccgacac 92876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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