View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13719_low_12 (Length: 226)
Name: NF13719_low_12
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 27670950 - 27670738
Alignment:
| Q |
1 |
agccatatcataggtcagtttcttcatcaacctcacaacttcaattgttttattctctttcaattctctcaataatactgttttcactaattcatccatc |
100 |
Q |
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| T |
27670950 |
agccatatcataggtcagtttcttcatcaacctcacaacttcaattgttttattctctttcaattctctcaataatactgttttcactaattcatccatc |
27670851 |
T |
|
| Q |
101 |
ttttctacatagttttgaaggcattcaggtttcaagaatttcagcatttcccccttaaccaacttgaacctgcacaaaaagtaaacacatgttttaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |
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| T |
27670850 |
ttttctacatagttttgaaggcattcaggtttcaagaatttcagcatttcccccttaaccaacttgaacctacacaaaaaataaacacaggttttaaatt |
27670751 |
T |
|
| Q |
201 |
gtgatcgcagttg |
213 |
Q |
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||||| |||||| |
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| T |
27670750 |
atgatcacagttg |
27670738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 27675307 - 27675494
Alignment:
| Q |
2 |
gccatatcataggtcagtttcttcatcaacctcacaacttcaattgttttattctctttcaattctctcaataatactgttttcactaattcatccatct |
101 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| | | ||||||| | | ||||||||||||||||| |
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| T |
27675307 |
gccatatcataggatagtttcttcatcaacctcacaacttgagttgttttattctctttcaattctttaagtaatactttgtacactaattcatccatct |
27675406 |
T |
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| Q |
102 |
tttctacatagttttgaaggcattcaggtttcaagaatttcagcatttcccccttaaccaacttgaacctgcacaaaaagtaaacaca |
189 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| || ||||||||||||||||||||| |
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| T |
27675407 |
ttttcacatagttttgaaggcattcaggtttcaagaatttcaacatttcccccttcaacaacctgtgcctgcacaaaaagtaaacaca |
27675494 |
T |
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