View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13719_low_13 (Length: 214)
Name: NF13719_low_13
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 8524833 - 8525013
Alignment:
| Q |
15 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
8524833 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac |
8524932 |
T |
|
| Q |
115 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaa |
195 |
Q |
| |
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||||||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8524933 |
ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaa |
8525013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 42125378 - 42125558
Alignment:
| Q |
15 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
42125378 |
gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac |
42125477 |
T |
|
| Q |
115 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaa |
195 |
Q |
| |
|
||||||||||| |||||||||| ||||| | |||||| ||||||||||||||||||| |||||| || | |||||| |||| |
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| T |
42125478 |
ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaa |
42125558 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 41712011 - 41711831
Alignment:
| Q |
15 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
114 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| |||||||||||| |
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| T |
41712011 |
gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac |
41711912 |
T |
|
| Q |
115 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaa |
195 |
Q |
| |
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| ||||||||| |||||||||| |||| | |||||| ||||| ||||||||||||| |||| | || | ||||||||||| |
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| T |
41711911 |
cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaa |
41711831 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 42130603 - 42130764
Alignment:
| Q |
15 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
114 |
Q |
| |
|
|||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||| ||| |
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| T |
42130603 |
gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat |
42130702 |
T |
|
| Q |
115 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttg |
176 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||| ||||| ||||||||||||| |||| |
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|
| T |
42130703 |
ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttg |
42130764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 42118787 - 42118897
Alignment:
| Q |
26 |
attgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaa-ctacgagacaagtcaagatgtgtgagactcaaaaacccaccaaact |
124 |
Q |
| |
|
||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
42118787 |
attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact |
42118886 |
T |
|
| Q |
125 |
ttgaatgaaaa |
135 |
Q |
| |
|
| ||||||||| |
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|
| T |
42118887 |
tagaatgaaaa |
42118897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 34231038 - 34230918
Alignment:
| Q |
16 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
115 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||| ||||||||| ||| |||||||| | ||||||||| |||||||| ||||||| ||||| |
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|
| T |
34231038 |
agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc |
34230939 |
T |
|
| Q |
116 |
caccaaactttgaatgaaaat |
136 |
Q |
| |
|
| |||||||| |||||||||| |
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|
| T |
34230938 |
cgccaaacttagaatgaaaat |
34230918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 34239081 - 34238921
Alignment:
| Q |
16 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
115 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| ||||||||||| || | || |||||||||||||||||| |||||| ||||| |
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|
| T |
34239081 |
agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc |
34238982 |
T |
|
| Q |
116 |
caccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttg |
176 |
Q |
| |
|
|||||||| |||| |||||| || || ||||| ||||||||||||||||||| |||| |
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|
| T |
34238981 |
tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttg |
34238921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 41570172 - 41570085
Alignment:
| Q |
84 |
agacaagtcaagatgtgtgagactcaaaaacccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagt |
171 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||||||||| ||||| |||| |||| ||||||| ||||| ||||||||||||| |
|
|
| T |
41570172 |
agacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagt |
41570085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 25521246 - 25521067
Alignment:
| Q |
16 |
agatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaacc |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||| ||||| |
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|
| T |
25521246 |
agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc |
25521147 |
T |
|
| Q |
116 |
caccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaa |
195 |
Q |
| |
|
|||||||||| | |||||||| ||| || ||||| ||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
25521146 |
caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaa |
25521067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 12250199 - 12250379
Alignment:
| Q |
15 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
114 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | || || |
|
|
| T |
12250199 |
gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat |
12250298 |
T |
|
| Q |
115 |
ccaccaaactttgaatgaaaataagagtcaaagaaataattgttagaaaggttgagtttttgaatataagcaagatggaaa |
195 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||| |||| ||||||||||||| |||| | || |||||||| |||| |
|
|
| T |
12250299 |
ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaa |
12250379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 11120152 - 11120272
Alignment:
| Q |
15 |
gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaagaaactacgagacaagtcaagatgtgtgagactcaaaaac |
114 |
Q |
| |
|
||||| ||| |||||||||||| |||| | |||||||||||||||||||||||| | || | |||| |||||||| ||||||||| |||||| |||| |
|
|
| T |
11120152 |
gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac |
11120251 |
T |
|
| Q |
115 |
ccaccaaactttgaatgaaaa |
135 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
11120252 |
ccaccaaacttagaatgaaaa |
11120272 |
T |
|
Back To:
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