View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13719_low_14 (Length: 208)
Name: NF13719_low_14
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 45270122 - 45270295
Alignment:
| Q |
20 |
ccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtttttctggcttgtttgg |
119 |
Q |
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| T |
45270122 |
ccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgttttcatgatgtttttctggcttgttttg |
45270221 |
T |
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| Q |
120 |
ttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttg |
193 |
Q |
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| T |
45270222 |
ttcttctggccaagtggtccatccatcttgatgaataaaatcaccaattgtggattccatgatgactgcctttg |
45270295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 45273672 - 45273744
Alignment:
| Q |
20 |
ccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgtt |
92 |
Q |
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| T |
45273672 |
ccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgtt |
45273744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 45281916 - 45281988
Alignment:
| Q |
20 |
ccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgtt |
92 |
Q |
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| T |
45281916 |
ccttccacttgaccctcctcgcaacattggcaccaggtccggtgtttgcatactctgcatagtaacatgtgtt |
45281988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 45293256 - 45293339
Alignment:
| Q |
20 |
ccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtt |
103 |
Q |
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| T |
45293256 |
ccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45293339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 45302216 - 45302299
Alignment:
| Q |
20 |
ccttccacttgaccctcctcgcaacattggcaccaggtccagtgttggcatactctgcaaagtaacacgtgttttcataatgtt |
103 |
Q |
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| T |
45302216 |
ccttccacttgatcctcctggcaatattggcaccaggtccagtgttggcgtactctgcatagtaacatgtgttttcaaaatgtt |
45302299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 45273753 - 45273829
Alignment:
| Q |
119 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
195 |
Q |
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| T |
45273753 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgct |
45273829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 45281997 - 45282073
Alignment:
| Q |
119 |
gttcttctggccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
195 |
Q |
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| T |
45281997 |
gttctccttgccaaatggtccatccatctggatgaatgaaatcaccaatggtggattccatgacgacagtctttgct |
45282073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 45293346 - 45293413
Alignment:
| Q |
128 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
195 |
Q |
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| T |
45293346 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgct |
45293413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 45302306 - 45302373
Alignment:
| Q |
128 |
gccaagtggtccatccatcttgatgaatcaaatcaccaattgtggattccatgatgactgcctttgct |
195 |
Q |
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| T |
45302306 |
gccaaggggtccatccatctggatgaataaaatcaccaatggtggattccatgacgaccgtctttgct |
45302373 |
T |
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