View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13719_low_15 (Length: 201)

Name: NF13719_low_15
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13719_low_15
NF13719_low_15
[»] scaffold0051 (5 HSPs)
scaffold0051 (15-185)||(942-1112)
scaffold0051 (15-185)||(3819-3989)
scaffold0051 (15-177)||(7015-7177)
scaffold0051 (15-177)||(8616-8778)
scaffold0051 (15-177)||(7998-8160)


Alignment Details
Target: scaffold0051 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 1112 - 942
Alignment:
Q  15 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1112 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 1013  T
Q  115 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgatatttt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1012 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagatttt 942  T

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Target: scaffold0051; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 3989 - 3819
Alignment:
Q  15 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3989 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 3890  T
Q  115 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgatatttt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3889 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaacgagatttt 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 7177 - 7015
Alignment:
Q  15 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7177 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 7078  T
Q  115 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaac 177  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  7077 ttatggtcttgaatcataaaaatgattcaaaaagagaccatgttcaagagcaactcttggaac 7015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #4
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 8778 - 8616
Alignment:
Q  15 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8778 caaaggtacatgtaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 8679  T
Q  115 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaac 177  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  8678 ttatggtcttgaatcataaaaatgattcaaaaagagaccatgttcaagagcaactcttggaac 8616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #5
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 8160 - 7998
Alignment:
Q  15 caaaggtacatggaaatttcctactagagctattaatgatattgtaaaaaattattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 114  Q
    |||||||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8160 caaaggtatatggaaatttcctactagagctatgaatgatattgcaaaaatttattctcatatatttaaatgttgttgcttgatctattgcctcaaaagt 8061  T
Q  115 ttatggtcttgaatcataaagatgattcaaaaagagaccatgttcaagagcgactcttggaac 177  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  8060 ttatggtcttgaatcataaatatgattcaaaaagagaccatgttcaagagcaactcttggaac 7998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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