View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13719_low_2 (Length: 436)
Name: NF13719_low_2
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 7844517 - 7844760
Alignment:
| Q |
18 |
aatttaagactaggagattacatttttaattgcacgtgggcgaggagaaatattagttgtctgctgtggttacagctcaaaattcccacattactcttcg |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
7844517 |
aatttaagactaggagatgacatttttaattgcacgtgggcggggagaaatattagttgtctgctgcgattacagctcaaaattcccacattactcttcg |
7844616 |
T |
|
| Q |
118 |
ccgccttttgactactattaattttggattacttcccatctcttgagtgtgcattttgtaacaccagcaaaatcccctccattaattccgcagttgacct |
217 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7844617 |
cctcagtttgactactattaattttggattacttcccatctcttgagtgtgcattttgtaacaccagcaaaatcccttccattaattccgcagttgacct |
7844716 |
T |
|
| Q |
218 |
ttttagaaatattatttgtctgcaatttgcatgatgtggtcgag |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7844717 |
ttttagaaatattatttgtctgcaatttgcatgatgtggtcgag |
7844760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 69 - 296
Target Start/End: Original strand, 7838572 - 7838800
Alignment:
| Q |
69 |
attagttgtctgctgtggttacagctcaaaattcccacattactcttcgccgccttttgactactattaattttggattacttcccatctcttgagtgtg |
168 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7838572 |
attagttgtctattgcggttacagctcaaaattcccacattactcttcgctgccgtttgactactattaattttggattacttcccatctcttgagtgtg |
7838671 |
T |
|
| Q |
169 |
cattttgtaacaccagcaaaatcccctccattaattccgcagttgacctttttagaaatattatttgtctgcaatttgcatgatgtggtcgag-nnnnnn |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7838672 |
cattttgtaacaccagcaaaatcccctccattaattccgcagttgacctttttagaaatattatttgtctgcaatttgcatgatgtggtcgagtgttttt |
7838771 |
T |
|
| Q |
268 |
nggtagggctagagaaagattgaacagtt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7838772 |
tggtagggctagagaaagattgaacagtt |
7838800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 7844894 - 7844969
Alignment:
| Q |
295 |
tttatgagcatttgttaagtgtttatattgaacaatcttcttacatttgcttaagtgtatggccttttgctaccta |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7844894 |
tttatgagcatttgttaagtgtttatattgaacaatcttcttacatttgcttaagtgtatggccttttgctaccta |
7844969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 7838895 - 7838970
Alignment:
| Q |
295 |
tttatgagcatttgttaagtgtttatattgaacaatcttcttacatttgcttaagtgtatggccttttgctaccta |
370 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7838895 |
tttatgagcatttcttaagtgtttatattgaacaatcttcttacatttgctcaagtgtatggccttttgctaccta |
7838970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University