View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13719_low_4 (Length: 365)
Name: NF13719_low_4
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 35789534 - 35789871
Alignment:
| Q |
16 |
atgaaaaccgtcccagaatacatattcagttgcattcgcacacgttcctatggagtccttattgcacaatatagatgtctctatcaaaccagttccacaa |
115 |
Q |
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| T |
35789534 |
atgaaaaccgtcccagaatacatattcagttgcattcgcacacgttcctatggagtccttattgcacaatatagatgtctctatcaagccagttccacaa |
35789633 |
T |
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| Q |
116 |
caagccttccttgcttcataaaaccctgtgg-nnnnnnngtagtggtatgcaacagaaggaaaattattcatagtcctccttgctcatgagccataacaa |
214 |
Q |
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| T |
35789634 |
caagccttccttgcttcataaaaccctgtggaaaaaaaagtagtggtatgcaacagaaggaaaattattcatag---tccttgctcatgagccataacaa |
35789730 |
T |
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| Q |
215 |
gtaataatatatnnnnnnnntcaaacagacaattatgtagtttaccattttctgtaggcttagtgacaaggtcatggagaggttggtagatatcaaggac |
314 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789731 |
gtaataatatataaaaaaaatcaaacagacaattatgtagtttaccattttctgtaggcttagtgacaaggtcatggagaggttggtagatatcaaggac |
35789830 |
T |
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| Q |
315 |
agccaatgtgaggttactaagcactttttgcaagttctgtg |
355 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
35789831 |
agccaatgtgaggttactaagctctttttgcaagttctgtg |
35789871 |
T |
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