View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13719_low_5 (Length: 352)
Name: NF13719_low_5
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 9763980 - 9763637
Alignment:
| Q |
7 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763980 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
9763881 |
T |
|
| Q |
107 |
ttattgatctaatctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763880 |
ttattgatctaatctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaag |
9763781 |
T |
|
| Q |
201 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763780 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
9763681 |
T |
|
| Q |
301 |
attttgctgatttgcatgctgctcaaaaggataacaagaagaat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9763680 |
attttgctgatttgcatgctgctcaaaaggataacaagaagaat |
9763637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 9778433 - 9778090
Alignment:
| Q |
7 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778433 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
9778334 |
T |
|
| Q |
107 |
ttattgatctaatctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaag |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778333 |
ttattgatctaatctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaag |
9778234 |
T |
|
| Q |
201 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778233 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
9778134 |
T |
|
| Q |
301 |
attttgctgatttgcatgctgctcaaaaggataacaagaagaat |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9778133 |
attttgctgatttgcatgctgctcaaaaggataacaagaagaat |
9778090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 9770120 - 9769777
Alignment:
| Q |
7 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9770120 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
9770021 |
T |
|
| Q |
107 |
ttattgatctaatctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9770020 |
ttattgatctaatctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggttctgctgcaaacaatccaaag |
9769921 |
T |
|
| Q |
201 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9769920 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
9769821 |
T |
|
| Q |
301 |
attttgctgatttgcatgctgctcaaaaggataacaagaagaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9769820 |
attttgctgatttgcatgctgctcaaaaggataggaagaagaat |
9769777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 9784138 - 9783795
Alignment:
| Q |
7 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9784138 |
attaagaggtaggagatgagatcaacaatgttctatataaagacacaactagctgctcaatttcttattcataccccccttgaaacacaaaccttgttta |
9784039 |
T |
|
| Q |
107 |
ttattgatctaatctaa------ttatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaag |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9784038 |
ttattgatctaatctaaatctaattatatttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggttctgctgcaaacaatccaaag |
9783939 |
T |
|
| Q |
201 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9783938 |
gacaacgttggcagtaccactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggct |
9783839 |
T |
|
| Q |
301 |
attttgctgatttgcatgctgctcaaaaggataacaagaagaat |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9783838 |
attttgctgatttgcatgctgctcaaaaggataggaagaagaat |
9783795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 40 - 344
Target Start/End: Original strand, 49058424 - 49058736
Alignment:
| Q |
40 |
tatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgtttattattgatctaat-----ctaattatatttct |
133 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
49058424 |
tatataaagacacaactagctgcttaatttattattcataccctcccttgaa-cacaaaccttgttttttattgatctaatataatctaattatatttct |
49058522 |
T |
|
| Q |
134 |
ttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgct---gctgcaaacaatccaaaggacaacgttggcagtaccactaaggttgat |
230 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
49058523 |
gtgaacattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgctgcaaacaatcccaaggacaacgttggcagtaccactaagggtgat |
49058622 |
T |
|
| Q |
231 |
ccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcaaaagg |
330 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||||||| |||||||||| | |
|
|
| T |
49058623 |
acaatgaaagctcctggtggaaatggatccaacatttcaagggaggaatttgtgaaaaacccacaaggctattttgctgatttgcatactgctcaaaaag |
49058722 |
T |
|
| Q |
331 |
ataacaagaagaat |
344 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
49058723 |
ataacaagaagaat |
49058736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 4569192 - 4569508
Alignment:
| Q |
33 |
aatgttctatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgt-ttattattgatctaatctaattatatt |
130 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| ||||||| ||||||||| ||||||||| | || |||||||||| || || |||||| |
|
|
| T |
4569192 |
aatgttctatataaagccataactagctgctcaatttcttatccataccctcccttgaaaaacaaaccttttctttttattgatcttat-ta--tatatt |
4569288 |
T |
|
| Q |
131 |
tctttgatcattttgaactatggacggcaaaggaaatg---gcaatgttggtgctgctgca---aacaatccaaaggacaacgttggcagtaccactaag |
224 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||| || ||||| ||||| | ||| ||||| |
|
|
| T |
4569289 |
tctgtgaacattttgaactatggacggcaaaggaaataatagcaatgttggtggtgcagcagcaaacaatcccaaagacaatgttggtactactactaaa |
4569388 |
T |
|
| Q |
225 |
gttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctc |
324 |
Q |
| |
|
| |||| |||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4569389 |
ggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggagcaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctc |
4569488 |
T |
|
| Q |
325 |
aaaaggataacaagaagaat |
344 |
Q |
| |
|
| ||||||||||| |||||| |
|
|
| T |
4569489 |
agaaggataacaataagaat |
4569508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 14704342 - 14704658
Alignment:
| Q |
33 |
aatgttctatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgt-ttattattgatctaatctaattatatt |
130 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||| ||||||| ||||||||| ||||||||| | || |||||||||| || || |||||| |
|
|
| T |
14704342 |
aatgttctatataaagccataactagctgctcaattttttatccataccctcccttgaaaaacaaaccttttctttttattgatcttat-ta--tatatt |
14704438 |
T |
|
| Q |
131 |
tctttgatcattttgaactatggacggcaaaggaaatg---gcaatgttggtgctgctgca---aacaatccaaaggacaacgttggcagtaccactaag |
224 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||||||| || ||||| ||||| | ||| ||||| |
|
|
| T |
14704439 |
tctgtgaacattttgaactatggacggcaaaggaaataatagcaatgttggtggtgcagcagcaaacaatcccaaagacaatgttggtactactactaaa |
14704538 |
T |
|
| Q |
225 |
gttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctc |
324 |
Q |
| |
|
| |||| |||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14704539 |
ggtgatacaatgaaagctcctggtggagatggatcaaacatttcaagggagcaatttgagaaaagtcctaagggctattttgctgatttgcatgctgctc |
14704638 |
T |
|
| Q |
325 |
aaaaggataacaagaagaat |
344 |
Q |
| |
|
| ||||||||||| |||||| |
|
|
| T |
14704639 |
agaaggataacaataagaat |
14704658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 33 - 343
Target Start/End: Original strand, 49042562 - 49042887
Alignment:
| Q |
33 |
aatgttctatataaagacacaactagctgctcaatttcttattcatacccccc--------ttgaaacacaaaccttgtttatt---attgatctaatct |
121 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||| ||||||| || |||||||||||||||||||| || |||||||| || |
|
|
| T |
49042562 |
aatgttctatataaagccataactagctgctcaatttcttatccataccctcccttgaaagttgaaacacaaaccttgtttttttttattgatcttatt- |
49042660 |
T |
|
| Q |
122 |
aattatatttctttgatcattttgaactatggacggcaaaggaaatg---gcaatgttggtgctgctgca---aacaatccaaaggacaacgttggcagt |
215 |
Q |
| |
|
|| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||| || ||||| ||||| | |
|
|
| T |
49042661 |
-atagtatttctgtgaacattttgaactatggacggcaaaggaaataatagcaatgttggtggtggtgcagcaaacaatcccaaagacaatgttggtgct |
49042759 |
T |
|
| Q |
216 |
accactaaggttgatccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggctattttgctgatttgc |
315 |
Q |
| |
|
|| ||||| | |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
49042760 |
actactaaaggtgatacaatgaaagctcctggtggagatggatccaacatttcaagggaggaatttgagaaaaacccacaaggctattttgctgatttgc |
49042859 |
T |
|
| Q |
316 |
atgctgctcaaaaggataacaagaagaa |
343 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
49042860 |
atgctgctcaaaaggatagtaagaagaa |
49042887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 22642859 - 22643074
Alignment:
| Q |
129 |
tttctttgatcattttgaactatggacggcaaaggaaatggcaatgttggtgctgctgcaaacaatccaaaggacaacgttggcagtaccactaaggttg |
228 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| | |||||||||||||||||||||||||| | || |
|
|
| T |
22642859 |
tttctttgatcattttgaactatggacaacaaaggaaatgacaataatggtgctgctgcaaacaatgccaaggacaacgttggcagtaccactaaaggtg |
22642958 |
T |
|
| Q |
229 |
atccaatgaaagcacctggaggagatggatccaacatttcaagggaggaatttgagaaaaatcctaagggctattttgctgatttgcatgctgctcaaaa |
328 |
Q |
| |
|
|| | |||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
22642959 |
atacgatgaaagctcctggtgaagatggatccaacatttcaagggagcaatttgagaaaaatccacaaggctattttgctgatttgcatgctgctcaaaa |
22643058 |
T |
|
| Q |
329 |
ggataacaagaagaat |
344 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22643059 |
ggataacaagaagaat |
22643074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 22642789 - 22642860
Alignment:
| Q |
35 |
tgttctatataaagacacaactagctgctcaatttcttattcataccc-cccttgaaacacaaaccttgttt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
22642789 |
tgttctatataaagacacaactagctgctcggtttcttattcataccctcccttgaaacacaaaccttgttt |
22642860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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