View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13719_low_6 (Length: 318)

Name: NF13719_low_6
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13719_low_6
NF13719_low_6
[»] chr2 (10 HSPs)
chr2 (45-301)||(43796719-43796975)
chr2 (48-110)||(12238527-12238589)
chr2 (1-45)||(43797039-43797083)
chr2 (69-110)||(17317159-17317200)
chr2 (49-88)||(32522090-32522129)
chr2 (45-88)||(40301354-40301397)
chr2 (45-108)||(42839361-42839424)
chr2 (45-86)||(32366154-32366195)
chr2 (77-117)||(2401708-2401748)
chr2 (68-116)||(12223971-12224019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (45-108)||(227688-227751)
[»] chr8 (27 HSPs)
chr8 (50-109)||(9781196-9781255)
chr8 (45-109)||(28280690-28280754)
chr8 (45-111)||(1184762-1184828)
chr8 (45-108)||(2669630-2669693)
chr8 (48-109)||(34286607-34286668)
chr8 (45-109)||(31079207-31079271)
chr8 (48-110)||(28879038-28879100)
chr8 (72-110)||(35168361-35168399)
chr8 (45-85)||(2563363-2563403)
chr8 (77-109)||(14942391-14942423)
chr8 (44-108)||(35453392-35453456)
chr8 (45-104)||(402129-402188)
chr8 (49-88)||(30973991-30974030)
chr8 (45-88)||(42102109-42102152)
chr8 (45-88)||(42363357-42363400)
chr8 (77-111)||(2563323-2563357)
chr8 (73-110)||(18396916-18396953)
chr8 (81-110)||(30973955-30973984)
chr8 (45-85)||(218293-218333)
chr8 (45-85)||(694853-694893)
chr8 (45-85)||(699062-699102)
chr8 (45-85)||(731916-731956)
chr8 (45-85)||(855812-855852)
chr8 (45-85)||(11988202-11988242)
chr8 (49-85)||(19925433-19925469)
chr8 (49-85)||(37410957-37410993)
chr8 (49-85)||(43577226-43577262)
[»] chr3 (13 HSPs)
chr3 (49-109)||(38524069-38524129)
chr3 (48-108)||(37601071-37601131)
chr3 (48-109)||(43376678-43376737)
chr3 (70-110)||(45331361-45331401)
chr3 (49-88)||(3645305-3645344)
chr3 (49-88)||(20894505-20894544)
chr3 (49-88)||(29614196-29614235)
chr3 (81-110)||(2086782-2086811)
chr3 (45-86)||(4257342-4257383)
chr3 (81-110)||(4974277-4974306)
chr3 (53-110)||(19307817-19307874)
chr3 (45-110)||(45049415-45049480)
chr3 (69-109)||(29270472-29270512)
[»] scaffold0091 (1 HSPs)
scaffold0091 (49-116)||(2624-2691)
[»] chr4 (19 HSPs)
chr4 (47-114)||(22397348-22397415)
chr4 (48-103)||(43983426-43983481)
chr4 (48-110)||(7148752-7148814)
chr4 (49-110)||(2141621-2141682)
chr4 (48-109)||(26206398-26206459)
chr4 (54-118)||(48591474-48591538)
chr4 (50-110)||(54412093-54412153)
chr4 (45-88)||(2702756-2702799)
chr4 (49-88)||(15184549-15184588)
chr4 (60-103)||(55852998-55853041)
chr4 (48-86)||(52700588-52700626)
chr4 (45-86)||(9201655-9201696)
chr4 (69-110)||(9319170-9319211)
chr4 (48-109)||(52274164-52274225)
chr4 (69-109)||(825663-825703)
chr4 (81-109)||(2702806-2702834)
chr4 (54-110)||(28663408-28663464)
chr4 (45-81)||(35010220-35010256)
chr4 (49-109)||(43136662-43136722)
[»] chr1 (18 HSPs)
chr1 (45-119)||(8410120-8410194)
chr1 (48-104)||(6337800-6337856)
chr1 (48-108)||(48819281-48819341)
chr1 (45-88)||(15235201-15235244)
chr1 (45-88)||(15791386-15791429)
chr1 (53-115)||(28870199-28870261)
chr1 (45-79)||(29333428-29333462)
chr1 (47-88)||(37148136-37148177)
chr1 (47-88)||(37156961-37157002)
chr1 (45-88)||(22088452-22088495)
chr1 (45-88)||(32497312-32497355)
chr1 (45-88)||(51162271-51162314)
chr1 (69-111)||(37431145-37431187)
chr1 (45-86)||(41003391-41003432)
chr1 (45-85)||(32810875-32810915)
chr1 (68-104)||(38781059-38781095)
chr1 (69-109)||(45267446-45267486)
chr1 (45-108)||(51409748-51409811)
[»] chr6 (6 HSPs)
chr6 (45-110)||(2034270-2034335)
chr6 (49-110)||(32165305-32165366)
chr6 (79-110)||(8011135-8011166)
chr6 (45-88)||(10184370-10184413)
chr6 (48-109)||(10755324-10755385)
chr6 (77-121)||(17914901-17914945)
[»] chr5 (11 HSPs)
chr5 (48-110)||(40696981-40697043)
chr5 (55-110)||(1942990-1943045)
chr5 (45-88)||(15413994-15414037)
chr5 (45-108)||(38461323-38461386)
chr5 (48-110)||(42706776-42706838)
chr5 (45-109)||(28357333-28357397)
chr5 (49-88)||(5203478-5203517)
chr5 (45-88)||(25332279-25332322)
chr5 (45-88)||(33757090-33757133)
chr5 (48-109)||(41534604-41534665)
chr5 (45-85)||(26003002-26003042)
[»] chr7 (12 HSPs)
chr7 (48-109)||(47511024-47511085)
chr7 (45-109)||(29378626-29378690)
chr7 (45-88)||(24371447-24371490)
chr7 (48-109)||(43818923-43818982)
chr7 (49-86)||(18260890-18260927)
chr7 (39-88)||(21027548-21027597)
chr7 (48-109)||(30094775-30094836)
chr7 (48-86)||(35809094-35809132)
chr7 (45-87)||(42083458-42083500)
chr7 (51-109)||(46743931-46743989)
chr7 (77-109)||(22032729-22032761)
chr7 (82-110)||(35809056-35809084)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 45 - 301
Target Start/End: Complemental strand, 43796975 - 43796719
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796975 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 43796876  T
Q  145 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaagctcattcttgccattcccatttga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796875 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaagctcattcttgccattcccatttga 43796776  T
Q  245 tgatgattcaccaacacaaaagttcttgtcataacgaaggtgcaaaagatttgcagc 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796775 tgatgattcaccaacacaaaagttcttgtcataacgaaggtgcaaaagatttgcagc 43796719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 12238527 - 12238589
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  12238527 cttataaataatacattaatgcttatttatttgcataagctctaaaataagccaatcccaacg 12238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43797083 - 43797039
Alignment:
Q  1 ttaccacctcggcctgtttggattgagtcaattttgagcttacta 45  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  43797083 ttaccacctgggcctgtttggattgagtctattttgagcttacta 43797039  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 17317200 - 17317159
Alignment:
Q  69 cttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  17317200 cttatttatttacataagctcaaaaataagtcaatccaaacg 17317159  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 32522090 - 32522129
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  32522090 ttataaataatacataaaaacttatttatttacataagct 32522129  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 40301397 - 40301354
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  40301397 aaacttataaataatacataaaaacttatttatttgcataagct 40301354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 42839361 - 42839424
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    |||||||| |||||||||| || |||||||||| ||||||||||| | ||||| |||| |||||    
T  42839361 aaacttatgaataatacataaaaacttatttatctacataagctcaataataaaccaacccaaa 42839424  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 32366195 - 32366154
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataag 86  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  32366195 aaacttataaataatacataaaaacttatttatttgcataag 32366154  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 117
Target Start/End: Original strand, 2401708 - 2401748
Alignment:
Q  77 tttacataagctctaaaataagccaatccaaacgacccctt 117  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  2401708 tttatataagctctaaaataagctaatccaaacgagccctt 2401748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 12223971 - 12224019
Alignment:
Q  68 acttatttatttacataagctctaaaataagccaatccaaacgacccct 116  Q
    ||||| || ||| ||||||||| ||||||||||||||||||||| ||||    
T  12223971 acttaattctttgcataagctcaaaaataagccaatccaaacgaaccct 12224019  T

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Target: scaffold0004 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 227751 - 227688
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  227751 aaacttataaatactacattaatgcttatttattcgcataagctctaaaataagccaatccaaa 227688  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 9781255 - 9781196
Alignment:
Q  50 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9781255 tataaataatacattaatgcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 28280754 - 28280690
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||||    
T  28280754 aaacttataaataatacataaatgcatatttatttgcataagctctaaaataagctaatccaaac 28280690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 1184828 - 1184762
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacga 111  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||    
T  1184828 aaacttttaaatgatacattaatgcttatttatttgcataagctttaaaataagccaattcaaacga 1184762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 108
Target Start/End: Complemental strand, 2669693 - 2669630
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    |||||||||||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||    
T  2669693 aaacttataaataatacattagagcttatttatttgcataagctataaaataaaccaatccaaa 2669630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 34286607 - 34286668
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  34286607 cttatgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 31079207 - 31079271
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||| ||||||||||| ||| | ||||||||  ||||||||||||||||||| |||||||||    
T  31079207 aaacttaaaaataatacataaatgcatatttattaccataagctctaaaataagctaatccaaac 31079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 28879100 - 28879038
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||| ||||||    
T  28879100 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacg 28879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 35168399 - 35168361
Alignment:
Q  72 atttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacg 35168361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 2563403 - 2563363
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  2563403 aaacttataaataatacattaatatttatttatttgcataa 2563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 14942423 - 14942391
Alignment:
Q  77 tttacataagctctaaaataagccaatccaaac 109  Q
    |||||||||||||||||||||||||||||||||    
T  14942423 tttacataagctctaaaataagccaatccaaac 14942391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 35453456 - 35453392
Alignment:
Q  44 taaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||  ||||||||||||| ||||    
T  35453456 taaacttatgaataatacataaaagcttatttatttgcataagctaaaaaataagccaattcaaa 35453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 402129 - 402188
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 104  Q
    ||||||||||||||||||| || |||||||||||||| | ||||  |||||||| |||||    
T  402129 aaacttataaataatacataaaaacttatttatttacgttagctaaaaaataagacaatc 402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 30974030 - 30973991
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  30974030 ttataaataatacattaatgcttctttatttacataagct 30973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 42102152 - 42102109
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42102152 aaacttataaataatacataaaaacttatttatttgcataagct 42102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 42363357 - 42363400
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42363357 aaacttataaataatacataaaaacttatttatttgcataagct 42363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 2563357 - 2563323
Alignment:
Q  77 tttacataagctctaaaataagccaatccaaacga 111  Q
    ||||||||| |||||||||||||||||||||||||    
T  2563357 tttacataacctctaaaataagccaatccaaacga 2563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 18396953 - 18396916
Alignment:
Q  73 tttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacg 18396916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 30973984 - 30973955
Alignment:
Q  81 cataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||||||||||||||    
T  30973984 cataagctctaaaataagccaatccaaacg 30973955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 218293 - 218333
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  218293 aaacttataaataatacataaaaatttatttatttacataa 218333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 694853 - 694893
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  694853 aaacttataaataatacataaaaatttatttatttacataa 694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 699062 - 699102
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  699062 aaacttataaataatacataaaaatttatttatttacataa 699102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 731916 - 731956
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  731916 aaacttataaataatacataaaaatttatttatttacataa 731956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 855812 - 855852
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || | ||||||||||||||||    
T  855812 aaacttataaataatacataaaaatttatttatttacataa 855852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 11988242 - 11988202
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  11988242 aaacttataaataatacataaaaacttatttatttgcataa 11988202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 19925433 - 19925469
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  19925433 ttataaataatacattaatgcttatttatttgcataa 19925469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 37410957 - 37410993
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||| || ||||||||||||||||||    
T  37410957 ttataaataatacataaaaacttatttatttacataa 37410993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 43577262 - 43577226
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataa 85  Q
    |||||||||||||||||||| |||||||||| |||||    
T  43577262 ttataaataatacattaatatttatttatttgcataa 43577226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 38524129 - 38524069
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||    
T  38524129 ttataaataatacattaatacttatttatttgcataaactctaaaataagttaatccaaac 38524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 37601071 - 37601131
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    |||||||||||||||||||   |||||||||| |||||||||||||||||| |||||||||    
T  37601071 cttataaataatacattaacgtttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 43376737 - 43376678
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||||||||||| ||  |||||||| |||||||| |||||||||| |||||||||    
T  43376737 cttataaataatacattaagac--atttatttgcataagctgtaaaataagctaatccaaac 43376678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 45331361 - 45331401
Alignment:
Q  70 ttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  45331361 ttatttatttacataagctaaaaaataagccaatccaaacg 45331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 3645344 - 3645305
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3645344 ttataaataatacataaaaacttatttatttacataagct 3645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 20894544 - 20894505
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20894544 ttataaataatacataaaaacttatttatttacataagct 20894505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 29614235 - 29614196
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  29614235 ttataaataatacataaaaacttatttatttacataagct 29614196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 2086782 - 2086811
Alignment:
Q  81 cataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||||||||||||||    
T  2086782 cataagctctaaaataagccaatccaaacg 2086811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 4257342 - 4257383
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataag 86  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  4257342 aaacttataaataatacataaaaacttatttatttgcataag 4257383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 110
Target Start/End: Complemental strand, 4974306 - 4974277
Alignment:
Q  81 cataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||||||||||||||    
T  4974306 cataagctctaaaataagccaatccaaacg 4974277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 110
Target Start/End: Complemental strand, 19307874 - 19307817
Alignment:
Q  53 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||| |  ||||||||||    
T  19307874 aaataatactttaatgcttatttatttacgtaaactctaaaatatgttaatccaaacg 19307817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 45049415 - 45049480
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||| |||| |||||| ||| |||||||  |||| || ||||||||| |||||||||||    
T  45049415 aaacttataaacaatatattaatgcttgtttatttgtataaactttaaaataagtcaatccaaacg 45049480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 29270472 - 29270512
Alignment:
Q  69 cttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||| ||||||||  |||||||||||||||||||    
T  29270472 cttatttatttgcataagctaaaaaataagccaatccaaac 29270512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 2624 - 2691
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccct 116  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| |||||    
T  2624 ttataaataatacattaatacttctttatttgcataaactctaaaataagtcaatacaaacggcccct 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 22397348 - 22397415
Alignment:
Q  47 acttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccc 114  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||  |||| ||||||||||    
T  22397348 acttataaataatacattaatatttatttatttgtataagctctaaaataaatcaattcaaacgaccc 22397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 43983426 - 43983481
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaat 103  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  43983426 cttataaataatacattaatgcttatttatttgtataagctctaaaataagccaat 43983481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 7148814 - 7148752
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  7148814 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 7148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 2141682 - 2141621
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||| |||| ||  ||||||||||| ||||||||||||||||||| ||| ||||||    
T  2141682 ttataaataacacataaaagcttatttatttgcataagctctaaaataagctaattcaaacg 2141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 26206398 - 26206459
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    |||||||||||||||| || || ||||||||| ||||| ||||||||||||  |||||||||    
T  26206398 cttataaataatacataaagacatatttatttgcataaactctaaaataagataatccaaac 26206459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 48591474 - 48591538
Alignment:
Q  54 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccctta 118  Q
    ||||||| || || |||||||||||| |||||||||  |||||||||||||| ||||| ||||||    
T  48591474 aataatatataaaaacttatttatttgcataagctcagaaataagccaatcctaacgaaccctta 48591538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 54412093 - 54412153
Alignment:
Q  50 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||||||| || | |||||||||| |||||| |  ||||||||||||||||||||    
T  54412093 tataaataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacg 54412153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 2702756 - 2702799
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||||||||||||||| |||||||||||||| | ||||||||    
T  2702756 aaacttataaataatacactaatacttatttatgtgcataagct 2702799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 15184588 - 15184549
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15184588 ttataaataatacataaaaacttatttatttacataagct 15184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 55853041 - 55852998
Alignment:
Q  60 acattaatacttatttatttacataagctctaaaataagccaat 103  Q
    ||||||||||||||||||||||||||  |||||||||| |||||    
T  55853041 acattaatacttatttatttacataaattctaaaataaaccaat 55852998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 52700588 - 52700626
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataag 86  Q
    |||||||||||||||| || |||||||||||||||||||    
T  52700588 cttataaataatacataaagacttatttatttacataag 52700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 9201696 - 9201655
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataag 86  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  9201696 aaacttataaataatacataaaaacttatttatttgcataag 9201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 9319170 - 9319211
Alignment:
Q  69 cttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  9319170 cttatttatttacataagctaaaaaataagccaaaccaaacg 9319211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 52274164 - 52274225
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||| |||||||||| ||   |||||||||| ||||||||| ||||||||||||| |||||    
T  52274164 cttatcaataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 825703 - 825663
Alignment:
Q  69 cttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  825703 cttatttatttgcataagctcaaaaagaagccaatccaaac 825663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 2702806 - 2702834
Alignment:
Q  81 cataagctctaaaataagccaatccaaac 109  Q
    |||||||||||||||||||||||||||||    
T  2702806 cataagctctaaaataagccaatccaaac 2702834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 28663464 - 28663408
Alignment:
Q  54 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||| ||  || |||||||| ||||||||| |||||||| |||||||||||    
T  28663464 aataatacataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacg 28663408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 35010256 - 35010220
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttac 81  Q
    ||||||||||||||||||| || ||||||||||||||    
T  35010256 aaacttataaataatacataaaaacttatttatttac 35010220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 43136662 - 43136722
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    |||| ||||| |||| || |||||||||||  ||||||||| |||||||| ||||||||||    
T  43136662 ttatgaataacacataaagacttatttattcgcataagctcaaaaataagtcaatccaaac 43136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 8410194 - 8410120
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaa 119  Q
    |||||||| |||||||||| || |||||||||||| |||| |||||||||||||| ||| ||||||| |||||||    
T  8410194 aaacttatgaataatacataaaaacttatttatttgcataggctctaaaataagctaattcaaacgagcccttaa 8410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 6337800 - 6337856
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 104  Q
    ||||| |||||||||| ||  |||||||||||||||||||||||||||||| |||||    
T  6337800 cttatgaataatacataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 48819341 - 48819281
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    ||||| |||||||||||||  || |||||||| ||||||||| ||||||||||||||||||    
T  48819341 cttatgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaaa 48819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 15235201 - 15235244
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15235201 aaacttataaataatacataaaaacttatttatttacataagct 15235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 15791429 - 15791386
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15791429 aaacttataaataatacataaaaacttatttatttacataagct 15791386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 28870261 - 28870199
Alignment:
Q  53 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccc 115  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  28870261 aaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacgccccc 28870199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 29333462 - 29333428
Alignment:
Q  45 aaacttataaataatacattaatacttatttattt 79  Q
    |||||||||||||||||||||||||||||||||||    
T  29333462 aaacttataaataatacattaatacttatttattt 29333428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 37148136 - 37148177
Alignment:
Q  47 acttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37148136 acttataaataatacattaatgcttatttatttgcataagct 37148177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 37156961 - 37157002
Alignment:
Q  47 acttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37156961 acttataaataatacattaatgcttatttatttgcataagct 37157002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 22088452 - 22088495
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||| |||||||||||| || |||||||||||||||||||||    
T  22088452 aaacttgtaaataatacataaaaacttatttatttacataagct 22088495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 32497312 - 32497355
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  32497312 aaacttataaataatacataaaaacttatttatttgcataagct 32497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 51162314 - 51162271
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||    
T  51162314 aaacttgtaaataatacattaatgcttatttatttgcataagct 51162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 37431187 - 37431145
Alignment:
Q  69 cttatttatttacataagctctaaaataagccaatccaaacga 111  Q
    ||||||||||| || |||||| |||||||||||||||||||||    
T  37431187 cttatttatttgcacaagctcaaaaataagccaatccaaacga 37431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 41003432 - 41003391
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataag 86  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  41003432 aaacttataaataatacataaaaacttatttatttgcataag 41003391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 32810915 - 32810875
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  32810915 aaacttataaataatacatgaaggcttatttatttacataa 32810875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 38781095 - 38781059
Alignment:
Q  68 acttatttatttacataagctctaaaataagccaatc 104  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  38781095 acttatttatttgcataagctcaaaaataagccaatc 38781059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 45267486 - 45267446
Alignment:
Q  69 cttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  45267486 cttatttatttgcataagctcaaaaataagtcaatccaaac 45267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 51409748 - 51409811
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagcc-aatccaaa 108  Q
    |||||||| ||||||||||  | |||||||||||| ||||||||| |||||||||| ||||||||    
T  51409748 aaacttatgaataatacatacaaacttatttatttgcataagctc-aaaataagcctaatccaaa 51409811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 2034270 - 2034335
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||| |||| |||||||||||||||    
T  2034270 aaacttataaataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacg 2034335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 32165305 - 32165366
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||||||    
T  32165305 ttataaataatacataaaaacttatttattttcataaactctaaaataagctaatccaaacg 32165366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 110
Target Start/End: Original strand, 8011135 - 8011166
Alignment:
Q  79 tacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||||||||||||||||||||||||||    
T  8011135 tacataagctctaaaataagccaatccaaacg 8011166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 10184370 - 10184413
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  10184370 aaacttataaataatagataaaaacttatttatttacataagct 10184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 10755324 - 10755385
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||  |||||||||||||||||||    
T  10755324 cttatgaataatacgtaaaagcttatttatttgcataagctaaaaaataagccaatccaaac 10755385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 17914945 - 17914901
Alignment:
Q  77 tttacataagctctaaaataagccaatccaaacgaccccttaact 121  Q
    |||| |||||||||||||||||  ||||||||||| |||||||||    
T  17914945 tttatataagctctaaaataagttaatccaaacgagcccttaact 17914901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 40697043 - 40696981
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    |||||||||||||||| || |||||||||||| ||||||||| |||||||| |||| ||||||    
T  40697043 cttataaataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  55 ataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 15414037 - 15413994
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15414037 aaacttatcaataatacattaatacttatttatttgcataagct 15413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 38461323 - 38461386
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 108  Q
    ||||||||||||||||||| ||  |||||||||||  |||||||||||||||||  ||||||||    
T  38461323 aaacttataaataatacataaaggcttatttatttttataagctctaaaataagttaatccaaa 38461386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 42706838 - 42706776
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 110  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  42706838 cttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 42706776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 28357397 - 28357333
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    |||||||||||||||||||  |  | ||||||||| |||||||| |||||||||| |||||||||    
T  28357397 aaacttataaataatacatataggcatatttatttgcataagctttaaaataagctaatccaaac 28357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 5203478 - 5203517
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  5203478 ttataaataatacataaatacttatttatttgcataagct 5203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 25332279 - 25332322
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  25332279 aaacttataaataatatattaatgcttatttatttgcataagct 25332322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 33757133 - 33757090
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  33757133 aaacttataaataatacataaaaacttatttatttgcataagct 33757090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 41534665 - 41534604
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||| |||||||||| ||  ||||||||||| ||||| ||  |||||||||||||||||||    
T  41534665 cttatgaataatacataaaagcttatttatttgcataatctgaaaaataagccaatccaaac 41534604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 26003042 - 26003002
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataa 85  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  26003042 aaacttataaataatacataaaaacttatttatttgcataa 26003002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 47511085 - 47511024
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| |||||||||||||||||||    
T  47511085 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 29378690 - 29378626
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||| ||||||||||||| ||  ||||||||||| ||||||||| || ||||||||||||||||    
T  29378690 aaactcataaataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 24371447 - 24371490
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  24371447 aaacttataaataatacattaaaacttatttatttgcataagct 24371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 43818923 - 43818982
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    |||||||||||||||| || ||  |||||||| ||||||||||||||||||| |||||||||    
T  43818923 cttataaataatacataaagac--atttatttgcataagctctaaaataagctaatccaaac 43818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 18260890 - 18260927
Alignment:
Q  49 ttataaataatacattaatacttatttatttacataag 86  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18260890 ttataactaatacattaatacttatttatttacataag 18260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 21027548 - 21027597
Alignment:
Q  39 cttactaaacttataaataatacattaatacttatttatttacataagct 88  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||||||    
T  21027548 cttaataaacttataaataatacataaaaacttatttgtttacataagct 21027597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 30094775 - 30094836
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||||| ||||| ||  ||||||||  |||||||||||||||||| |||||||||    
T  30094775 cttataaataatatattaagacacatttatttgtataagctctaaaataagctaatccaaac 30094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 35809132 - 35809094
Alignment:
Q  48 cttataaataatacattaatacttatttatttacataag 86  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35809132 cttataaataatacattaatgcttatttatttgcataag 35809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 42083458 - 42083500
Alignment:
Q  45 aaacttataaataatacattaatacttatttatttacataagc 87  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  42083458 aaacttatgaataatacataaaaacttatttatttacataagc 42083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 46743989 - 46743931
Alignment:
Q  51 ataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||||| ||  ||||||||||| ||| ||||| ||| |||||||||||||||    
T  46743989 ataaataatacataaaatcttatttatttgcatgagctcaaaagtaagccaatccaaac 46743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 22032761 - 22032729
Alignment:
Q  77 tttacataagctctaaaataagccaatccaaac 109  Q
    ||||||||||||||||||||||| |||||||||    
T  22032761 tttacataagctctaaaataagctaatccaaac 22032729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 110
Target Start/End: Complemental strand, 35809084 - 35809056
Alignment:
Q  82 ataagctctaaaataagccaatccaaacg 110  Q
    |||||||||||||||||||||||||||||    
T  35809084 ataagctctaaaataagccaatccaaacg 35809056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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