View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13719_low_8 (Length: 291)
Name: NF13719_low_8
Description: NF13719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13719_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 1869849 - 1869583
Alignment:
| Q |
8 |
gcagaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtg |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1869849 |
gcagaacgtgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtg |
1869750 |
T |
|
| Q |
108 |
ataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869749 |
ataatactcttccagagatcaaagcaagagtgtcaaaaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
1869650 |
T |
|
| Q |
208 |
ccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatcctt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869649 |
ccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatcctt |
1869583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 112 - 274
Target Start/End: Complemental strand, 1916910 - 1916748
Alignment:
| Q |
112 |
tactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccac |
211 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
1916910 |
tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctac |
1916811 |
T |
|
| Q |
212 |
cttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatcctt |
274 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||||| |||||| | |||||||||||||||||| |
|
|
| T |
1916810 |
cttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatcctt |
1916748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 1916988 - 1916916
Alignment:
| Q |
10 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattca |
82 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
1916988 |
agaacgtgtgagagagctagaagaagaagctggatccaacatttgtactaacaaaaggaccaaactgagttca |
1916916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 274
Target Start/End: Complemental strand, 17488694 - 17488430
Alignment:
| Q |
10 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17488694 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17488595 |
T |
|
| Q |
110 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc |
209 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17488594 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct |
17488495 |
T |
|
| Q |
210 |
accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatcctt |
274 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
17488494 |
gccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatcctt |
17488430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 17564520 - 17564784
Alignment:
| Q |
10 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17564520 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17564619 |
T |
|
| Q |
110 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc |
209 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17564620 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct |
17564719 |
T |
|
| Q |
210 |
accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatcctt |
274 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
17564720 |
gccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatcctt |
17564784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University