View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_11 (Length: 506)
Name: NF1371_high_11
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 30 - 453
Target Start/End: Original strand, 39784315 - 39784746
Alignment:
| Q |
30 |
agagagaataagaatataatggaacacgtagagtaaatgtagataaaaatttgatgtgatttgtaagtagatttataaacactctt--------gaagtc |
121 |
Q |
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| T |
39784315 |
agagagaataagaatataatggaacacgtagagtaaatgtagataaaaatttgatgtgatttgtaaatagatttataaacactctttgaattttgaagtc |
39784414 |
T |
|
| Q |
122 |
tatccccattctagtaaatttccagagtccgtctcaaataaacttttatgctataaaaaatgtatataaaaaagttcataagtgatcagttgctcaaaca |
221 |
Q |
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| T |
39784415 |
tattcccattccagtaaatttctagagtccgtctcaaataaacttttatgctataaaaaatgtatataaaaaagttcataagtgatcggttgctcaaaca |
39784514 |
T |
|
| Q |
222 |
cacaagttaagcctaattaaccgaataatgttattttatagtaatacagttaccaattggttataacaattagctagaaattaggtacatattaataaga |
321 |
Q |
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| T |
39784515 |
cacaagtaaagcctaattaaccgaataatgttattttatagtaatacagttaccaattggttataacaattagctagaaattaggtacatattaataaga |
39784614 |
T |
|
| Q |
322 |
tccaaatcgtnnnnnnnngggtgacttaatttgttggcaatgatcaactgttgcatttgaggtttctcatgatgctcaggctctctataagttcagtcgc |
421 |
Q |
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| T |
39784615 |
cccaaatcgtaaaaaaaagggtgacttaatttgttggcaatgatcagctgttgcgtttgaggtttctcatgatgctcaggctctctataagttcagtcgc |
39784714 |
T |
|
| Q |
422 |
aagcataggaggtatggtgagtggctacagtg |
453 |
Q |
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| T |
39784715 |
aagcataggaggtatggtgagtgcctacagtg |
39784746 |
T |
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