View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_13 (Length: 488)
Name: NF1371_high_13
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 30 - 479
Target Start/End: Original strand, 35059943 - 35060404
Alignment:
| Q |
30 |
taatcctcctcaatccatccataaccaccatctccaacctctccataacccccttctccgatggctacgacgacggtttcatcgccatcacaaacaccga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35059943 |
taatcctcctcaatccatccataaccaccatctccaacctctccataacccccttctccgatggctacaacgacggtttcatcgccatcacaaacaccga |
35060042 |
T |
|
| Q |
130 |
cgctgatttccaccaatacacctcacagttcaacacccgtggctccgacttcatcaccaatctcatactctctgccaaacaagaatccaaacctttcact |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060043 |
cgctgatttccatcaatacacctcacagttcaacacccgtggctccgacttcatcaccaatctcatactctctgccaaacaagaatccaaacctttcact |
35060142 |
T |
|
| Q |
230 |
tgcttactctacaccataatcattccttgggctccacgggttgctcgtggtttcaacctccgctcagctaaactctggattgaacccgccacagtgtttg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060143 |
tgcttactctacaccataatcattccttgggctccacgagtagctcgtggtttcaacctccgctcagctaaactctggattgaacccgccacagtgtttg |
35060242 |
T |
|
| Q |
330 |
atattctctattactactttcatggttatagtaaccatatcaat------------aaccaaaaccaaactaccattgaattaccaggattgcccttcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35060243 |
atattctctattactactttcatggttatagtaaccatatcaataaccaaaaccaaaaccaaaaccaaactaccattgaattaccaggattgcccttcac |
35060342 |
T |
|
| Q |
418 |
actatcgccacgtgacataccttcttttttatttacctcaaatcctagtgtgttgtcctttg |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35060343 |
actatcgccacgtgacataccttcttttttatttacctcaaatcctagtgtgttgtcttttg |
35060404 |
T |
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