View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_14 (Length: 488)
Name: NF1371_high_14
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 9e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 83 - 225
Target Start/End: Original strand, 35822441 - 35822583
Alignment:
| Q |
83 |
taatatcaacaacaagtatattaaaaatgacaaaactatacccaaatatgggtataacaaaactctctagcatacatatgtcttgaagtagtttacatat |
182 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
35822441 |
taataccaacaacaagtatattaaaaatgacaaaactatacccaaatatgggtataacgaaactctctagcatacatatgtcttgaagtagtttacacat |
35822540 |
T |
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| Q |
183 |
aaaaatttaatttttggatggtacaacactcactacctcataa |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35822541 |
aaaaatttaatttttggatggtacaacactcactacctcataa |
35822583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 35822720 - 35822826
Alignment:
| Q |
286 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttgatgttctttttg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35822720 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttggtgttctttttg |
35822819 |
T |
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| Q |
386 |
tattttc |
392 |
Q |
| |
|
||||||| |
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| T |
35822820 |
tattttc |
35822826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 35822667 - 35822695
Alignment:
| Q |
221 |
cataatatatattcaaataagaaatgtct |
249 |
Q |
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| T |
35822667 |
cataatatatattcaaataagaaatgtct |
35822695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 51935011 - 51935095
Alignment:
| Q |
3 |
catctccaagaaaataccggttatgatcggtagaaagagtagtctttccagtacctaagagatcacaaaattaaccagattaata |
87 |
Q |
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| T |
51935011 |
catctccaatcaaataccggttatgatcggtagaaagagtagtctttccagtacctaagagatcacaaaattaaccagattaata |
51935095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 12995644 - 12995680
Alignment:
| Q |
23 |
ttatgatcggtagaaagagtagtctttccagtaccta |
59 |
Q |
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|||||||| ||||||||||| |||||||||||||||| |
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| T |
12995644 |
ttatgatcagtagaaagagttgtctttccagtaccta |
12995680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 13070294 - 13070330
Alignment:
| Q |
23 |
ttatgatcggtagaaagagtagtctttccagtaccta |
59 |
Q |
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|||||||| ||||||||||| |||||||||||||||| |
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|
| T |
13070294 |
ttatgatcagtagaaagagttgtctttccagtaccta |
13070330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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