View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_16 (Length: 478)
Name: NF1371_high_16
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 4946176 - 4946434
Alignment:
| Q |
5 |
tgtccaataatatataaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaannnnnnnnnnnntataagatgaccatagaacccatagtttga |
104 |
Q |
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| T |
4946176 |
tgtccaacaaaatttaaagcttaaattctcaaaaggacgtgctaaaatgatgttgcaaagagagag----tataagatgactatagaacccatagtttga |
4946271 |
T |
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| Q |
105 |
ctaaatttaacgagtgaaaagggatcagccacattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgta |
204 |
Q |
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| T |
4946272 |
ctaaatttaacgagtgaaaagggatcagccgcattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgta |
4946371 |
T |
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| Q |
205 |
ttgtgactctatataaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
269 |
Q |
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| T |
4946372 |
ttgtgactc--tataaatcacttacatctctttatttctcatcttacaacaatttggaatattaa |
4946434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 4946490 - 4946571
Alignment:
| Q |
326 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttggtcttctaacatgttagatttcaactgattaa |
407 |
Q |
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| T |
4946490 |
aggtatcctatttaactcttaatctgctttttcttttagggttttctttcgtcttctaacatgttagatttcaactgtttaa |
4946571 |
T |
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