View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1371_high_18 (Length: 477)
Name: NF1371_high_18
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 421
Target Start/End: Complemental strand, 34376271 - 34375863
Alignment:
| Q |
13 |
aatatcatgtttccatatgtgaatcaattttggcaactgctgcaatgtcaaattttttaattgataatgtgtgttgacatccccttttcttgtacctttt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34376271 |
aatatcatgtttccatatgtgaatcaattttggcaactgctgcaatgtcaaattttttaattgataatgtgtgttgacatccccttttcttgtacctttt |
34376172 |
T |
|
| Q |
113 |
cctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaagat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34376171 |
cctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaagat |
34376072 |
T |
|
| Q |
213 |
atggcagttcatgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34376071 |
atggcagttcatgacattctttgatacttatttttgagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtga |
34375972 |
T |
|
| Q |
313 |
tgccacctgtgaaacatgcatttatgtatttctcaattacgaaagtaactagtgaattaataacctaaaatgctacaattatgaattgatgaagcatata |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34375971 |
tgccacctgtgaaacatgcatttatgtatttctcaattacgaaagtaactagtgaattaataatctaaaatgctacaattatgaattgatgaagcatata |
34375872 |
T |
|
| Q |
413 |
tattagatc |
421 |
Q |
| |
|
||||||||| |
|
|
| T |
34375871 |
tattagatc |
34375863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 34288574 - 34288685
Alignment:
| Q |
218 |
agttcatgacattctttgatacttattttt-gagtttttgataaagtatccttcattatgcaacatggtccagctcaacatcttcgatccttgtgatgcc |
316 |
Q |
| |
|
|||| |||| ||||||||||| |||||||| ||||||| || |||||||| || ||||| ||||||| ||||||||| | |||||||||||||| |
|
|
| T |
34288574 |
agtttatgaaattctttgatatttattttttgagttttctatgaagtatccctcgttatgttgtttggtccaattcaacatctccaatccttgtgatgcc |
34288673 |
T |
|
| Q |
317 |
acctgtgaaaca |
328 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
34288674 |
acctgtaaaaca |
34288685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 34562939 - 34563017
Alignment:
| Q |
114 |
ctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtat |
192 |
Q |
| |
|
||||| ||||| ||| ||||||||| | ||||||||| | || |||| |||||||| |||||||||||| |||||||| |
|
|
| T |
34562939 |
ctcctactgatccaaacacctcaaccaatgaatcacagtcacttgcattgagttccctcacatgttgaagtatttgtat |
34563017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 15892049 - 15892147
Alignment:
| Q |
112 |
tcctcctcctgattcaatcacctcaactagtgaatcacaataacctgcagtgagttcctccacatgttgaagcatttgtattttattgtaaggaacaag |
210 |
Q |
| |
|
||||||||||||| ||| ||||||| |||||||||||||| || | | || ||||||| ||||| ||||||||||||||| | |||||| || ||||| |
|
|
| T |
15892049 |
tcctcctcctgatccaaacacctcatttagtgaatcacaattacttacggtcagttccttcacattttgaagcatttgtatctcattgtacggcacaag |
15892147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University