View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_high_2 (Length: 757)

Name: NF1371_high_2
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_high_2
NF1371_high_2
[»] chr3 (1 HSPs)
chr3 (30-715)||(46079327-46080014)


Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 30 - 715
Target Start/End: Original strand, 46079327 - 46080014
Alignment:
Q  30 atatccatatcctcctgtagaagggtagaccggtggagttcctaaaggtaaaataagtagcagtagtgacttaaacgataactgtatactcattactgca 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079327 atatccatatcctcctgtagaagggtagaccggcggagttcctaaaggtaaaataagtagcagtagtgacttaaacgataactgtatactcattactgca 46079426  T
Q  130 gaaataaaagcctttgtaggcatgtagctataggcgagctactctatactaatatgcgagatttacctgtttgcgcaagtcataattgtgacctccagca 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079427 gaaataaaagcctttgtaggcatgtagctataggcgagctactcaatactaatatgcgagatttacctgtttgcgcaagtcataattgtgacctccagca 46079526  T
Q  230 gtcaagtcagagtattctgaattcgctggatgttcggagtatcttttcaaagctgcactctgccacaaagttcaaatgatatgtgaaaaagtcttttaag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079527 gtcaagtcagagtattctgaattcgctggatgttcggagtatcttttcaaagctgcactctgccacaaagttcaaatgatatgtgaaaaagtcttttaag 46079626  T
Q  330 aataaattttaaatattgaggaatcaaagtgttaaattaggtaggaatcaggatagtgcttgaattctactaagtatggctaaacttgtagagaaggaat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079627 aataaattttaaatattgaggaatcaaagtgttaaattaggtaggaatcaggatagtgcttgaattctactaagtatggctaaacttgtagagaaggaat 46079726  T
Q  430 atttgcaagccatttgcataaagtttcatctgaatgatgctatataggtaaataaacacacaaacctgcaatttcagcttatgagtaagttcggcattta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079727 atttgcaagccatttgcataaagtttcatctgaatgatgctatataggtaaataaacacacaaacctgcaatttcagcttatgagtaagttcggcattta 46079826  T
Q  530 tcatttccaactgtcgaagtgagtggcttagccttactaatttttcttttagatctcttatttccatgtccttctctctgcaaatcacttctttatctct 629  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46079827 tcatttccaactgtcgaagtgagtagcttagccttactaatttttcttttagatctcttatttccatgtccttctctctgcaaatcacttctttatctct 46079926  T
Q  630 caaagaacatctgagattnnnnnnnnnnnnngccagagggt--aatgttagtcatatcatcacaaagggaattttgattgcttctgtg 715  Q
    ||||||||||||||||||             ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  46079927 caaagaacatctgagattaaaaaaagaaaaagccagagggtaaaatgttagtcatatcatcacaaagggaattttgattgcttctgtg 46080014  T

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