View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_high_20 (Length: 473)

Name: NF1371_high_20
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_high_20
NF1371_high_20
[»] chr7 (31 HSPs)
chr7 (89-335)||(8591343-8591589)
chr7 (107-383)||(8602697-8602973)
chr7 (113-305)||(8647670-8647862)
chr7 (113-338)||(8610633-8610858)
chr7 (113-305)||(7876775-7876967)
chr7 (113-305)||(8582632-8582824)
chr7 (111-349)||(29576886-29577124)
chr7 (113-308)||(8577258-8577453)
chr7 (113-336)||(8635409-8635632)
chr7 (113-305)||(13332091-13332283)
chr7 (166-305)||(8655371-8655510)
chr7 (148-305)||(3148375-3148532)
chr7 (113-305)||(8668434-8668626)
chr7 (113-311)||(8538773-8538971)
chr7 (113-338)||(29581073-29581298)
chr7 (108-305)||(8546639-8546836)
chr7 (142-311)||(8660242-8660411)
chr7 (113-233)||(8572559-8572679)
chr7 (148-239)||(10493008-10493099)
chr7 (157-253)||(6790423-6790519)
chr7 (162-242)||(17261410-17261490)
chr7 (113-305)||(27829286-27829478)
chr7 (142-307)||(1302309-1302474)
chr7 (142-242)||(17269098-17269198)
chr7 (103-206)||(8568797-8568900)
chr7 (141-305)||(8584477-8584641)
chr7 (113-305)||(8630197-8630389)
chr7 (121-187)||(8382289-8382355)
chr7 (146-230)||(8104067-8104151)
chr7 (249-308)||(8560800-8560859)
chr7 (146-230)||(8016309-8016393)
[»] chr5 (2 HSPs)
chr5 (148-305)||(28220951-28221108)
chr5 (157-305)||(42554128-42554276)
[»] chr2 (8 HSPs)
chr2 (141-305)||(12257855-12258019)
chr2 (113-305)||(16656541-16656733)
chr2 (113-305)||(12244344-12244536)
chr2 (157-305)||(43626333-43626481)
chr2 (113-305)||(14705432-14705624)
chr2 (133-299)||(12235787-12235953)
chr2 (113-305)||(7543246-7543438)
chr2 (171-242)||(16661070-16661141)
[»] chr1 (3 HSPs)
chr1 (157-311)||(15596072-15596226)
chr1 (148-305)||(34465189-34465346)
chr1 (148-242)||(4677544-4677638)
[»] chr4 (4 HSPs)
chr4 (113-296)||(9323014-9323197)
chr4 (113-296)||(9377493-9377676)
chr4 (113-296)||(9334986-9335168)
chr4 (141-311)||(35133451-35133621)
[»] chr8 (2 HSPs)
chr8 (163-305)||(43745843-43745982)
chr8 (113-311)||(12529837-12530035)
[»] chr6 (1 HSPs)
chr6 (142-185)||(28911312-28911355)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 89 - 335
Target Start/End: Original strand, 8591343 - 8591589
Alignment:
Q  89 atgcaggaagatagaaaaataaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagt 188  Q
    ||||||||||||| ||| ||||| |||| |||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||    
T  8591343 atgcaggaagataaaaagataaattaccgaagacagtgtttgctgggttagaagcagcctggttttttgcagcatcaccaatcaacctttgatcattagt 8591442  T
Q  189 aaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgtt 288  Q
    |||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  8591443 aaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctctgctgtattgttttggtcctgccaaactgctacacatgaatacgtt 8591542  T
Q  289 gttccaaggtcaattccaatagctggacccttgtatttcttggccat 335  Q
    || ||||||||||||||||| ||||||||||||| ||| ||||||||    
T  8591543 gtgccaaggtcaattccaattgctggacccttgtgttttttggccat 8591589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 107 - 383
Target Start/End: Original strand, 8602697 - 8602973
Alignment:
Q  107 ataaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaagg 206  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  8602697 ataaattaccaaagatagtgttgactgggttagaagcagcctgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaagg 8602796  T
Q  207 agtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcca 306  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||    
T  8602797 agtagttctgtttccttgatcattgtgaataatctctgccctgttgttttggtcctgccaaacagctacacatgaataggttgttccaaggtcaatacca 8602896  T
Q  307 atagctggacccttgtatttcttggccattctgtttgaagtgaccaaaaactgttttagagaaaatatctgaattga 383  Q
    || |||||||||||| |||| || |||||||||||||||||||   | |||||||||  ||| | ||||||||||||    
T  8602897 atcgctggacccttgaatttttttgccattctgtttgaagtgattgataactgttttgaagagactatctgaattga 8602973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 8647670 - 8647862
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||| || ||||||||||||||||||||||| || | |||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  8647670 taccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaagaaggtgtagt 8647769  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||  ||  |||| || || ||||| |||||||||||||||||||| |||||    
T  8647770 tctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctattcc 8647862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 113 - 338
Target Start/End: Original strand, 8610633 - 8610858
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||  ||||| | |||||| |||||||| |||||||| |||| |||||| ||||||||||||||| |||  |||||||||||||||||||| ||    
T  8610633 taccaaagactgtgttagctgggtttgaagcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggt 8610732  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagct 312  Q
    |||||||||||| ||||| || || ||||| ||||| |||||||| || ||||| || || ||||||||||| ||||||||||| ||||||||||||||     
T  8610733 tctgtttccttgctcattatggattatctcagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagca 8610832  T
Q  313 ggacccttgtatttcttggccattct 338  Q
    || ||||  ||||| |||||||||||    
T  8610833 ggtccctcatattttttggccattct 8610858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 7876967 - 7876775
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||| | ||||||||| |||||||||||||| |||| |||||||||||||||||||||||  || ||||||||||||||||| || ||    
T  7876967 taccaaagacagtgttggatgggttagaggcagcctgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgt 7876868  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    |||||| ||||| |||||||||||||| ||  ||||||||| ||  ||  |||| || || ||||| |||||||||||||||||||| |||||    
T  7876867 tctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcc 7876775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 8582632 - 8582824
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||| |||||||||| ||||||||||||||||| |||||||| |||| |||||||||||| ||||||  || ||||||||||||| ||||||| || ||    
T  8582632 taccatagatagtgttggttgggttagaagcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgt 8582731  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    | ||||||||||||||||||| || || ||  | | || |||||| || ||||| ||| | |||||||| || ||||| ||||||||||||||    
T  8582732 tttgtttccttgatcattgtgtatgatttccacacgatcgttttgctcctgccacactccaacacatgagtaggttgtaccaaggtcaattcc 8582824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 349
Target Start/End: Complemental strand, 29577124 - 29576886
Alignment:
Q  111 actaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagta 210  Q
    |||||| ||||||||||| |||||||| || |||||||||||||| |||| || |||||| |||||| |   |||||| ||||| |||| |||||| ||     
T  29577124 actaccgaagatagtgttggttgggtttgaggcagcctgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtg 29577025  T
Q  211 gttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatag 310  Q
    ||||| || |||||||||||||| || ||||| |||| ||||||  | |  |||||||||||||| |||||||| || || |||||||| |||||||| |    
T  29577024 gttctattgccttgatcattgtggatgatctcagctcgattgttacgctgctgccaaactgctacgcatgaataggtcgtgccaaggtcgattccaatgg 29576925  T
Q  311 ctggacccttgtatttcttggccattctgtttgaagtga 349  Q
    | || || |  ||||| ||||||||||||||| ||||||    
T  29576924 caggtccttcatattttttggccattctgtttcaagtga 29576886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 113 - 308
Target Start/End: Original strand, 8577258 - 8577453
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||| ||||| || | ||| |||| |||||| |||||||| |||| ||| |||||||| ||||||  ||  |||||||||||| |||||||||| ||    
T  8577258 taccaaaaatagtattggatggattagtagcagcttgatttttggcagcatcgccaatcaatctttgagaattggtaaaagcaacacaagaaggagtggt 8577357  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaat 308  Q
    ||||||||||||||||||||| ||||| ||| | | || |||||| || ||||| ||| | |||||||| || || || |||||||||||||||||    
T  8577358 tctgtttccttgatcattgtgtataatttctacacgatcgttttgttcatgccatactccaacacatgagtaagtcgtgccaaggtcaattccaat 8577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 113 - 336
Target Start/End: Complemental strand, 8635632 - 8635409
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| ||| || | ||||||||| | |||||| ||||| |||| ||||||||||||||||||  | ||||| ||||||||| ||||||| ||  |    
T  8635632 taccaaagacagtattggatgggttagaggaagcctggtttttggcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgat 8635533  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagct 312  Q
    |||||| ||||| |||||||| || ||||| || | |||  ||||    | ||||||||||||||||||||| ||||| |||||||| |||||||| ||     
T  8635532 tctgttcccttgctcattgtggatgatctcagcccgattaatttgactatcccaaactgctacacatgaatatgttgtgccaaggtcgattccaattgca 8635433  T
Q  313 ggacccttgtatttcttggccatt 336  Q
    || |||| |||||| |||||||||    
T  8635432 ggtccctcgtattttttggccatt 8635409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 13332283 - 13332091
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||||   |||||||  ||||  ||||| || |||| |||||||||||| ||||||||||   | ||||||||||||||||| |||||    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    ||| ||||||||||||||||||||||||||  |||| | || ||  ||  |||| || || |||||||| || |||||||||||||| |||||    
T  13332183 tctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaaggtcgattcc 13332091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 8655371 - 8655510
Alignment:
Q  166 ccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgcc 265  Q
    |||||||||||||||| |||||| |||||||||| |||||| |||||||| || |||||||||||||||||||||||  |||||||||  | |||  |||    
T  8655371 ccaatcaacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagcc 8655470  T
Q  266 aaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    | || || ||||||||||| |||||||| ||||| |||||    
T  8655471 acacagcaacacatgaataggttgttccgaggtctattcc 8655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 305
Target Start/End: Original strand, 3148375 - 3148532
Alignment:
Q  148 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctc 247  Q
    ||||| || |||| |||||||| |||||||||||||||||| ||||||||||||||||| || ||| |||| ||||| |||||||||||||||||  |||    
T  3148375 tgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactc 3148474  T
Q  248 tattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    | ||||  |  ||  ||||||| || || || |||||||||||||||||||| |||||    
T  3148475 tgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcc 3148532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 8668434 - 8668626
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| ||| |||||||||||||| ||||   | ||||||||||||||||| ||  |    
T  8668434 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaacaaaagaaggtgttat 8668533  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    || |||||||||||||||||||||||||||  |||| | || ||| ||  |||| || || ||||||||||| ||||||||||| || |||||    
T  8668534 tcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaagatctattcc 8668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 113 - 311
Target Start/End: Original strand, 8538773 - 8538971
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||||||||||||||| | ||| |||||||| |||| |||||||||||| | ||||  || | ||||| ||||| ||||||| || ||    
T  8538773 taccaaagacagtgtttgttgggttagaggaagcttgatttttggcagcatcaccaatcaatcgttgagaattactaaaaccaacacaagaaggtgtggt 8538872  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagc 311  Q
    | ||||||||||||| ||||| || |||||  | | || |||||| || ||||| ||| | |||||||| || || || |||||||||||||| |||||    
T  8538873 tttgtttccttgatcgttgtgtatgatctccacacgatcgttttgctcctgccacactccaacacatgagtaggtcgtgccaaggtcaattccgatagc 8538971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 113 - 338
Target Start/End: Complemental strand, 29581298 - 29581073
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||||||||||||||||||| |  |||||||||||||| |||| || || |||||||||  |    ||||| ||||| |||| |||||| || ||    
T  29581298 taccaaagatagtgtttgttgggtttgcggcagcctgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgtggt 29581199  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagct 312  Q
    ||  || |||||||||||||| || ||||| ||||  ||| | |  || ||||||||||||||||||||||| ||||| || ||||| ||||| |||||     
T  29581198 tccattgccttgatcattgtggatgatctcagctcggttgatattctcctgccaaactgctacacatgaataggttgtgccgaggtcgattccgatagca 29581099  T
Q  313 ggacccttgtatttcttggccattct 338  Q
    || || |  ||||| |||||||||||    
T  29581098 ggtccttcatattttttggccattct 29581073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 108 - 305
Target Start/End: Original strand, 8546639 - 8546836
Alignment:
Q  108 taaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaagga 207  Q
    |||| ||||||| | ||||||  |||||||||||| |||||||||||| |||| ||||||||||| ||||||   ||  || ||||||||| |||||||     
T  8546639 taaattaccaaatacagtgttgattgggttagaagaagcctgatttttggcagcatcaccaatcagcctttgggaatttgtgaaagcaacacaagaaggt 8546738  T
Q  208 gtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    || ||| |||||||||||||||||||||| || ||  | | || ||| || || ||||| ||| | |||||||| || || || ||||||||||||||    
T  8546739 gttgttttgtttccttgatcattgtgaatgatttccacacgatcgttctgctcctgccatactccaacacatgagtaagtcgtgccaaggtcaattcc 8546836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 142 - 311
Target Start/End: Original strand, 8660242 - 8660411
Alignment:
Q  142 gcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 241  Q
    ||||||||||| || |||| ||||||||||||||||||||| ||||| ||||||||||| ||||| || ||| |||||||||| || ||||  || ||||    
T  8660242 gcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatct 8660341  T
Q  242 ctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagc 311  Q
    |  ||| |||||  |  ||  |||| || || ||||| ||||| |||||||||||||| |||||||||||    
T  8660342 cgactcgattgtgattctccagccacacagcaacacacgaataggttgttccaaggtctattccaatagc 8660411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 8572559 - 8572679
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||||||| || | ||| |||| |||||| |||||||| |||| |||||| ||||| ||||||  || ||||||||||||| |||| ||||| ||    
T  8572559 taccaaagatagtattggatggattagtagcagcttgatttttggcagcatcaccgatcaatctttgagaattagtaaaagcaacacaagagggagttgt 8572658  T
Q  213 tctgtttccttgatcattgtg 233  Q
    |||||||||||| ||||||||    
T  8572659 tctgtttccttggtcattgtg 8572679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 10493099 - 10493008
Alignment:
Q  148 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataat 239  Q
    ||||| || |||| |||||| ||||||||||||||||   | ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  10493099 tgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataat 10493008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 6790423 - 6790519
Alignment:
Q  157 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgt 253  Q
    |||| |||||| ||||||||||| ||||| || ||||||||||||||||| || ||| |||| ||||| |||||||||||||||||  |||||||||    
T  6790423 gcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgt 6790519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 17261410 - 17261490
Alignment:
Q  162 atcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 242  Q
    |||||| |||||||||| ||| | || |||||||||||||||||||||| || |||||||||||||||||||||| |||||    
T  17261410 atcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaattttgtttccttgatcattgtgaatgatctc 17261490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 27829478 - 27829286
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||||   ||||| |||||||| || || || |||| ||||||||||||||| || |  || || ||||||||| ||||||| || ||    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
      |||| ||||| |||||||||||||||||  |||| |||| ||| || |||||  |||| || || || |||||||| || |||||||||||    
T  27829378 cttgttgccttgttcattgtgaataatctccactctgttgtgttgatcctgccacgctgcaacgcacgagtacgttgtacctaggtcaattcc 27829286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 1302309 - 1302474
Alignment:
Q  142 gcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 241  Q
    ||||||||||| || |||| |||||| ||||||||||||||||| || |||||||||||||| || || ||| |||| ||||| || ||||  || ||||    
T  1302309 gcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatct 1302408  T
Q  242 ctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaa 307  Q
    || |||||||||  |  ||  |||| || || ||||| ||||| || ||||||||||| |||||||    
T  1302409 ctactctattgtgattctccagccacacagcaacacacgaataagtagttccaaggtctattccaa 1302474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 17269098 - 17269198
Alignment:
Q  142 gcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatct 241  Q
    ||||| ||||| || || |||||||| || ||||||| ||| | || ||||||||||||||| ||||||||| |||| |||||||||||||| |||||||    
T  17269098 gcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtagttttgttgccttgatcattgtgtataatct 17269197  T
Q  242 c 242  Q
    |    
T  17269198 c 17269198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 8568797 - 8568900
Alignment:
Q  103 aaaaataaactaccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaag 202  Q
    |||||| || |||||||| ||||||| ||||| ||||||||||| |||||||| |||| |||||||||||| ||||||   | ||| ||||||||| |||    
T  8568797 aaaaatgaattaccaaaggtagtgttggttggattagaagcagcttgatttttggcagcatcaccaatcaatctttgagatttagtgaaagcaacacaag 8568896  T
Q  203 aagg 206  Q
    ||||    
T  8568897 aagg 8568900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 8584641 - 8584477
Alignment:
Q  141 agcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatc 240  Q
    |||||||||||  || |||| | |||||| ||||||||||||||| |||||||||||||| ||||| ||  || | || |||| ||| ||||||||||||    
T  8584641 agcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatc 8584542  T
Q  241 tctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    ||  |||| || ||||  ||   ||||||  | ||||| ||||| |||||||||||||| |||||    
T  8584541 tcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcc 8584477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 8630197 - 8630389
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||||  ||||||    ||||||||||  || |||| | |||||| ||||||||||||||| ||||||||||| || ||||| ||  |    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    | | || |||| ||||||||||||||||||  |||| || ||||  ||   ||||||  | ||||| ||||| |||||||||||||| |||||    
T  8630297 tttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcc 8630389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 8382355 - 8382289
Alignment:
Q  121 atagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcag 187  Q
    |||||||| ||||||||||| |||| |||||| || |||| |||||||| ||||||||||| |||||    
T  8382355 atagtgttggttgggttagaggcagtctgattcttagcagcatcaccaaccaacctttgatgatcag 8382289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 8104067 - 8104151
Alignment:
Q  146 cctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcatt 230  Q
    ||||||| || |||| |||||| |||||||||| |  |||||| ||||||||| |||| || || |||||||| |||||||||||    
T  8104067 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 8560800 - 8560859
Alignment:
Q  249 attgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaat 308  Q
    ||||||||| || ||||| ||| | |||||||| || |||||||||||||||||||||||    
T  8560800 attgttttgctcctgccatactccaacacatgagtaggttgttccaaggtcaattccaat 8560859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 8016393 - 8016309
Alignment:
Q  146 cctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcatt 230  Q
    ||||||| || |||| |||||| |||||||||| |  |||||| ||||||||| |||| || || |||| ||| |||||||||||    
T  8016393 cctgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcatt 8016309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 148 - 305
Target Start/End: Original strand, 28220951 - 28221108
Alignment:
Q  148 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctc 247  Q
    |||||||| |||| ||| ||||||||||||| |||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||||||||  | |    
T  28220951 tgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccc 28221050  T
Q  248 tattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    |||||| ||  |||||||| || || ||||||||||||||||||||||| || |||||    
T  28221051 tattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctattcc 28221108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 42554276 - 42554128
Alignment:
Q  157 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgtttt 256  Q
    |||| ||||||||||||||||| || || ||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||  ||||||| | ||    
T  42554276 gcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgtt 42554177  T
Q  257 ggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
      |||| ||| || |  ||||| |||||||||||||||||||| |||||    
T  42554176 catcttcccacacagtaacacacgaatacgttgttccaaggtctattcc 42554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 141 - 305
Target Start/End: Complemental strand, 12258019 - 12257855
Alignment:
Q  141 agcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatc 240  Q
    |||||| ||||| || |||| ||||||||||||||||||||| | ||||||||||||| ||||||| || ||||||||||||||||| |||||||| |||    
T  12258019 agcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgttctgtttccttgatcgttgtgaatgatc 12257920  T
Q  241 tctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    || |||| |   | ||| || |||||||| || || |||||||||||||| ||||||||||||||    
T  12257919 tcagctcgacaatattgttcctgccaaacagcaacgcatgaatacgttgtgccaaggtcaattcc 12257855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 16656733 - 16656541
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||| ||||||  ||||||||  ||| | ||||| || |||| |||||| |||||||||||||||| ||| ||||||||||||||||| || ||    
T  16656733 taccaaagatggtgttttgtgggttagcggcaacttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgt 16656634  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    ||||||||| || |||||||| || ||||||||||| ||||   ||||   ||| || || ||||||||||| |||||||||||||| |||||    
T  16656633 tctgtttccctggtcattgtgtatgatctctgctctgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctattcc 16656541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 113 - 305
Target Start/End: Complemental strand, 12244536 - 12244344
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||||   | ||||| |||||| |||||||| |||| ||||||||| ||||||||||| ||||| ||||||||| ||||||| || ||    
T  12244536 taccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtgttgt 12244437  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    |||||| || ||||| |||||||| || ||  | | |  || ||| || ||||| ||||| ||||||||||||||||| |||||||| |||||    
T  12244436 tctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcc 12244344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 157 - 305
Target Start/End: Original strand, 43626333 - 43626481
Alignment:
Q  157 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgtttt 256  Q
    |||| |||||||||||||||||| || | ||| |||| |||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||  ||||||    
T  43626333 gcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgtttt 43626432  T
Q  257 ggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
      ||  |||| || || | ||| |||||||||||||||||||| |||||    
T  43626433 catcaagccacacagcaatacaagaatacgttgttccaaggtctattcc 43626481  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 14705432 - 14705624
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||||   ||||| | |||||| ||||| || |||| ||||||||||||||  ||||  || || |||||||||||||||||||| ||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    ||| || |||||||| |||||||| || ||  ||| ||  | ||| || ||||| ||||| |||||||| |||||||| |||||||| |||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcc 14705624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 12235787 - 12235953
Alignment:
Q  133 gggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgt 232  Q
    ||||| |||||||| ||||| || |||| ||||||||||||||| ||||  || || ||||||||||||||||| || ||||| || |||||||| ||||    
T  12235787 gggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttgttctattgccttgatcgttgt 12235886  T
Q  233 gaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtc 299  Q
    |||| |||||  ||| |  ||  || || ||||| ||||| ||||||||||| ||||| ||||||||    
T  12235887 gaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtc 12235953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 7543246 - 7543438
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    ||||||||| |||||||   ||||| |||||||| ||||| || |||  |||||| |||||||| ||||  || || ||||||||||||||||| || ||    
T  7543246 taccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttgt 7543345  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    |||||| ||||| || |||||||| || ||  ||| || || ||| || ||||| ||||| ||||| || |||||||| |||||||| |||||    
T  7543346 tctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacgttgtgccaaggtctattcc 7543438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 16661141 - 16661070
Alignment:
Q  171 caacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 242  Q
    |||||||||| ||||||||||||||||||||||||| ||| || |||| |||| ||| ||||| ||||||||    
T  16661141 caacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatctc 16661070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 157 - 311
Target Start/End: Original strand, 15596072 - 15596226
Alignment:
Q  157 gcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgtttt 256  Q
    |||| ||||||||||||||||||||||| ||| |||| |||||||||||| ||| ||||||||||||| |||||||| ||||||||  ||||||| | ||    
T  15596072 gcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattctgtt 15596171  T
Q  257 ggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagc 311  Q
      ||  |||| || || ||||| |||||||||||||||||||| |||||||||||    
T  15596172 catcaagccacacagcaacacaagaatacgttgttccaaggtctattccaatagc 15596226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 305
Target Start/End: Complemental strand, 34465346 - 34465189
Alignment:
Q  148 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctc 247  Q
    ||||| || |||| || ||| ||||| |||||||||| ||||||||||||||||||||| || ||| |||| ||||| ||||||| |||||||||| |||    
T  34465346 tgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtggttgtgttaccttggtcattgtcaataatctctactc 34465247  T
Q  248 tattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    || ||| ||| || ||||| ||||| |||||||| || ||||| |||||||| |||||    
T  34465246 tactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcc 34465189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 148 - 242
Target Start/End: Complemental strand, 4677638 - 4677544
Alignment:
Q  148 tgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctc 242  Q
    ||||| || |||| || |||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| ||||||| |||||||||    
T  4677638 tgattcttagcagcattaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctc 4677544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 113 - 296
Target Start/End: Complemental strand, 9323197 - 9323014
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| |||||||||||||||||| ||||   | ||||||||||||||||| || ||    
T  9323197 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9323098  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaag 296  Q
    || |||||||||||||||||||||||||||  |||| | || ||| ||  |||| || || ||||| ||||| |||||||||||    
T  9323097 tcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9323014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 113 - 296
Target Start/End: Complemental strand, 9377676 - 9377493
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| |||||||||||||||||| ||||   | ||||||||||||||||| || ||    
T  9377676 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9377577  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaag 296  Q
    || |||||||||||||||||||||||||||  |||| | || ||| ||  |||| || || ||||| ||||| |||||||||||    
T  9377576 tcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9377493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 296
Target Start/End: Complemental strand, 9335168 - 9334986
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||||   ||||||| |||||  ||||| || |||| ||||||| |||||||||| ||||   | ||||||||||||||||| || ||    
T  9335168 taccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaacaaaagaaggtgttgt 9335070  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaag 296  Q
    || |||||||||||||||||||||||||||  |||| | || ||| ||  |||| || || ||||| ||||| |||||||||||    
T  9335069 tcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9334986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 311
Target Start/End: Original strand, 35133451 - 35133621
Alignment:
Q  141 agcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatc 240  Q
    |||||| ||||| || |||| |||||| |||||||||||||| | ||| ||||||| | ||||||| || ||| |||| | |||||| |||||||| ||     
T  35133451 agcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttgttttgttgctttgatcgttgtgaatgatt 35133550  T
Q  241 tctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagc 311  Q
    ||  ||| || || ||| |||||||| ||||| |||||||||||||||||||| ||||| ||||| |||||    
T  35133551 tcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagc 35133621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 305
Target Start/End: Original strand, 43745843 - 43745982
Alignment:
Q  163 tcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgctctattgttttggtctt 262  Q
    ||||| |||||||||| || |||||||||||||||||||||||   | ||| |||| |||||||||||||||||||||||  ||||||| | ||  ||||    
T  43745843 tcacctatcaacctttcatgatcagtaaaagcaacaaaagaag---ttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatctt 43745939  T
Q  263 gccaaactgctacacatgaatacgttgttccaaggtcaattcc 305  Q
    |||| || || ||||| |||||||||||||||||||| |||||    
T  43745940 gccacacagcaacacacgaatacgttgttccaaggtctattcc 43745982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 113 - 311
Target Start/End: Original strand, 12529837 - 12530035
Alignment:
Q  113 taccaaagatagtgtttgttgggttagaagcagcctgattttttgcagaatcaccaatcaacctttgatcatcagtaaaagcaacaaaagaaggagtagt 212  Q
    |||||||||||||||| || |||||||| | ||| |||||||| |||| || ||||||||| || |||  || ||||||||||||| ||||||| || ||    
T  12529837 taccaaagatagtgttggtggggttagaggaagcttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgt 12529936  T
Q  213 tctgtttccttgatcattgtgaataatctctgctctattgttttggtcttgccaaactgctacacatgaatacgttgttccaaggtcaattccaatagc 311  Q
    | |||||||||||||||||||||| || ||  | | ||   |||| |||||||| ||| | |||||||| || ||||| ||||| |||||||| |||||    
T  12529937 tttgtttccttgatcattgtgaattatttccacacgatcagtttgctcttgccatactccaacacatgagtaagttgtgccaagatcaattcctatagc 12530035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 28911312 - 28911355
Alignment:
Q  142 gcagcctgattttttgcagaatcaccaatcaacctttgatcatc 185  Q
    ||||||||||| || |||| ||||||||||||||||||||||||    
T  28911312 gcagcctgattcttagcagcatcaccaatcaacctttgatcatc 28911355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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