View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1371_high_22 (Length: 452)
Name: NF1371_high_22
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1371_high_22 |
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| [»] scaffold0329 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 35150318 - 35149899
Alignment:
| Q |
9 |
agcagagaacaaattaaagaataatagtcagataatattttgaatgatattatgtccatctacaaccttacaaaggcattgtttgatgttaggacccaca |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35150318 |
agcatagaacaaattaaagaataatagtcagataatattttgaatgatattatgtccatctacaaccttacaaaggcattttttgatgttaggacccaca |
35150219 |
T |
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| Q |
109 |
tttttgtcttctc---aaaattatatcctccataactcataccatcttgtctataaccatccaacacaccatcaactaacttgatgaagccttatgtttc |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
35150218 |
tttttgtcttctcctcaaaattatatcctccataactcataccatcttgtctataaccctccaacacaccatcaactaatttgatgaagccttatgtttc |
35150119 |
T |
|
| Q |
206 |
tctccatttagccaaacaaccgaaaatgtgatgttgttacaaggacttctgagtcccagacctatgatcctgcctagtctaaggcttgaacacctgtaat |
305 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35150118 |
tctccatttagccaaacaactgaaaatgtgatgttgttacaaggacttctgagtcccagacctatgatcctgcctagtctaaggtttgaacacctgtaat |
35150019 |
T |
|
| Q |
306 |
gagcaacgatgaagccataacaactgaactcaagcacctgcagaatatggcttaggatccacctgataaagagtgtcttttaatacctaagagaaagcaa |
405 |
Q |
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||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| |
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| T |
35150018 |
gagcaacgatgaagccatatcaattgaactcaagcacctagagaatatggcttaggatccatctgataaagagtgtcttttaatgcctaagagaatgcaa |
35149919 |
T |
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| Q |
406 |
gacgataagtatgaggtata |
425 |
Q |
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| T |
35149918 |
gacgataagtatgaggtata |
35149899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 425
Target Start/End: Complemental strand, 35128045 - 35127896
Alignment:
| Q |
276 |
tgcctagtctaaggcttgaacacctgtaatgagcaacgatgaagccataacaactgaactcaagcacctgcagaatatggcttaggatccacctgataaa |
375 |
Q |
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|||||| |||||||||||||||| ||||||| |||||||||||||| | || |||| ||| |||||| || ||| ||||||||||||||||||||||| |
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| T |
35128045 |
tgcctattctaaggcttgaacacttgtaatgcacaacgatgaagccacactaattgaaatcaggcacctacaaaatttggcttaggatccacctgataaa |
35127946 |
T |
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| Q |
376 |
gagtgtcttttaatacctaagagaaagcaagacgataagtatgaggtata |
425 |
Q |
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||| ||||||||| | | |||||| ||||||||| |||||||||||||| |
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| T |
35127945 |
gagcatcttttaatgcatgagagaatgcaagacgacaagtatgaggtata |
35127896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 35128080 - 35128044
Alignment:
| Q |
152 |
ttgtctataaccatccaacacaccatcaactaacttg |
188 |
Q |
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||||||||||||||||||||| |||| |||||||||| |
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| T |
35128080 |
ttgtctataaccatccaacacgccattaactaacttg |
35128044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 304
Target Start/End: Original strand, 19283585 - 19283832
Alignment:
| Q |
61 |
tgtccatctacaaccttacaaaggcattgtttgatgttaggacccacatttttgtctt----ctcaaaattatatcctccataactcataccatcttgtc |
156 |
Q |
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|||||||| |||||||||| ||| ||||||||||| |||||||||| |||||||||| |||||||| | |||||||| || ||||| |||||| |
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| T |
19283585 |
tgtccatcaacaaccttacgaagacattgtttgatattaggacccatctttttgtctttttcctcaaaatcctctcctccattacctttaccaacttgtc |
19283684 |
T |
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| Q |
157 |
tataaccatccaacacaccatcaactaacttgatgaagccttatgtttctctccatttagccaaacaaccgaaaatgtgatgttgttacaaggacttctg |
256 |
Q |
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| || | ||||||||| ||||| |||| || || | ||||||||||| |||||||| ||||| | || ||| |||||| |||||||||| |
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| T |
19283685 |
cagaatcgctcaacacaccctcaaccaactcagcaaaaccatcggtttctctccacttagccaagcaacctaggatatgacgttgttgcaaggacttcct |
19283784 |
T |
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| Q |
257 |
agtcccagacctatgatcctgcctagtctaaggcttgaacacctgtaa |
304 |
Q |
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| | ||||||| | |||| |||||||||| |||||||||||||||||| |
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| T |
19283785 |
atttccagacccacgatcttgcctagtctgaggcttgaacacctgtaa |
19283832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 334
Target Start/End: Complemental strand, 16937 - 16804
Alignment:
| Q |
201 |
gtttctctccatttagccaaacaaccgaaaatgtgatgttgttacaaggacttctgagtcccagacctatgatcctgcctagtctaaggcttgaacacct |
300 |
Q |
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||||||||||| |||||||| ||| | | || ||| |||||| |||||||||| | | ||| ||||| |||| ||||||||| |||||||||||| | |
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| T |
16937 |
gtttctctccacttagccaagcaaacaaggatatgacgttgttgcaaggacttcctatttccaaacctacgatcttgcctagtcagaggcttgaacacat |
16838 |
T |
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| Q |
301 |
gtaatgagcaacgatgaagccataacaactgaac |
334 |
Q |
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| T |
16837 |
gtaatgtgcaacaaggaagcaacaacaaccgaac |
16804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 17081 - 17024
Alignment:
| Q |
61 |
tgtccatctacaaccttacaaaggcattgtttgatgttaggacccacatttttgtctt |
118 |
Q |
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|||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||||| |
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| T |
17081 |
tgtccatcaacaatcttacgaaggcattgtttaatgttaggacccatctttttgtctt |
17024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 49348 - 49396
Alignment:
| Q |
205 |
ctctccatttagccaaacaaccgaaaatgtgatgttgttacaaggactt |
253 |
Q |
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| T |
49348 |
ctctccatttagccaagcaaccaaaaatgtgatattgttgcaaggactt |
49396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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