View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_high_31 (Length: 413)

Name: NF1371_high_31
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_high_31
NF1371_high_31
[»] chr8 (8 HSPs)
chr8 (1-405)||(13414811-13415210)
chr8 (101-377)||(40588754-40589012)
chr8 (101-377)||(23853822-23854095)
chr8 (101-380)||(8451144-8451420)
chr8 (223-380)||(478077-478234)
chr8 (101-370)||(7127113-7127379)
chr8 (223-377)||(185615-185768)
chr8 (229-266)||(9496797-9496834)
[»] chr4 (21 HSPs)
chr4 (101-376)||(41835336-41835608)
chr4 (103-342)||(21321419-21321655)
chr4 (101-377)||(49951203-49951476)
chr4 (101-371)||(28537817-28538082)
chr4 (101-377)||(18442171-18442442)
chr4 (105-377)||(55734903-55735172)
chr4 (104-371)||(2064746-2065010)
chr4 (101-342)||(56065519-56065757)
chr4 (101-371)||(51735002-51735268)
chr4 (223-377)||(37245876-37246030)
chr4 (101-377)||(29655690-29655962)
chr4 (101-377)||(32577072-32577344)
chr4 (101-380)||(51259550-51259827)
chr4 (241-377)||(26422626-26422762)
chr4 (225-340)||(28426194-28426309)
chr4 (225-340)||(49119461-49119576)
chr4 (238-371)||(47226360-47226493)
chr4 (101-167)||(28426086-28426152)
chr4 (101-167)||(49119618-49119684)
chr4 (247-370)||(44936113-44936236)
chr4 (101-146)||(37246104-37246149)
[»] chr5 (17 HSPs)
chr5 (115-377)||(11375537-11375796)
chr5 (101-370)||(25730698-25730964)
chr5 (101-377)||(15988773-15989046)
chr5 (106-377)||(4267994-4268262)
chr5 (106-380)||(27292329-27292600)
chr5 (101-380)||(8387976-8388252)
chr5 (101-371)||(20204845-20205112)
chr5 (101-377)||(22767281-22767554)
chr5 (100-380)||(26597478-26597755)
chr5 (105-269)||(12660210-12660371)
chr5 (105-377)||(41940761-41941030)
chr5 (110-377)||(27532930-27533195)
chr5 (219-377)||(34652278-34652436)
chr5 (114-340)||(37448028-37448251)
chr5 (101-150)||(16074626-16074675)
chr5 (73-101)||(18673747-18673775)
chr5 (245-377)||(32632546-32632678)
[»] chr2 (11 HSPs)
chr2 (101-342)||(88449-88687)
chr2 (101-405)||(12130638-12130935)
chr2 (219-380)||(34695925-34696086)
chr2 (219-380)||(34718337-34718498)
chr2 (101-333)||(18345555-18345783)
chr2 (221-338)||(1418044-1418161)
chr2 (264-370)||(13109900-13110006)
chr2 (227-286)||(9709942-9710001)
chr2 (280-377)||(22845602-22845699)
chr2 (306-342)||(11292121-11292157)
chr2 (227-263)||(26198706-26198742)
[»] chr7 (13 HSPs)
chr7 (101-377)||(16731823-16732096)
chr7 (101-377)||(17709957-17710230)
chr7 (103-377)||(16098382-16098653)
chr7 (105-371)||(1581509-1581773)
chr7 (101-377)||(9328626-9328898)
chr7 (101-380)||(22289131-22289407)
chr7 (101-320)||(17877298-17877514)
chr7 (220-377)||(29200979-29201136)
chr7 (228-319)||(30824557-30824646)
chr7 (231-380)||(30493631-30493779)
chr7 (301-380)||(3601739-3601818)
chr7 (237-277)||(3601684-3601724)
chr7 (307-380)||(44480893-44480966)
[»] chr1 (11 HSPs)
chr1 (106-377)||(44527148-44527416)
chr1 (101-377)||(5609229-5609502)
chr1 (105-338)||(16816863-16817092)
chr1 (100-377)||(52109343-52109616)
chr1 (101-377)||(4395049-4395321)
chr1 (101-362)||(25682541-25682799)
chr1 (101-380)||(48949745-48950021)
chr1 (101-380)||(51113205-51113481)
chr1 (101-371)||(36733584-36733853)
chr1 (132-342)||(48166158-48166365)
chr1 (227-371)||(44602765-44602909)
[»] chr3 (12 HSPs)
chr3 (106-377)||(53496927-53497195)
chr3 (101-380)||(46007191-46007465)
chr3 (101-377)||(42340301-42340573)
chr3 (99-269)||(2615381-2615548)
chr3 (228-380)||(55199525-55199677)
chr3 (190-266)||(27941129-27941202)
chr3 (258-377)||(647187-647306)
chr3 (202-302)||(647310-647406)
chr3 (305-380)||(27608924-27608999)
chr3 (305-380)||(34497393-34497468)
chr3 (103-342)||(48227305-48227542)
chr3 (347-405)||(19117720-19117774)
[»] chr6 (7 HSPs)
chr6 (101-371)||(14680049-14680319)
chr6 (101-377)||(28107029-28107302)
chr6 (101-371)||(15606024-15606291)
chr6 (176-371)||(29368086-29368276)
chr6 (220-377)||(15053199-15053356)
chr6 (219-368)||(30802024-30802173)
chr6 (219-367)||(11731703-11731848)
[»] scaffold0446 (1 HSPs)
scaffold0446 (101-342)||(76-314)
[»] scaffold0922 (1 HSPs)
scaffold0922 (230-342)||(323-434)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 13414811 - 13415210
Alignment:
Q  1 ttggcctttgatctttgtataagttggccatctcttgttttggtgggtggatttgtttggtatctt--taagagttaacgttaaatacattttgttccaa 98  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||||||| |||    
T  13414811 ttggcctttgatctttgtataagctggccatctcttgttttggtgggtggatttgtttggtatcttgttaagggttaacgttaaacacattttgtttcaa 13414910  T
Q  99 caagacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttatt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||| |||||||||||    
T  13414911 caagacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgtttttttagagactttcgcgggcaatttatt 13415010  T
Q  199 cga-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacaga 297  Q
    ||  ||||||||||||||||    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13415011 cgggctcaaacgaaatggca----gcggacaaatatgacagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacaga 13415106  T
Q  298 tgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaattttaattatgctattattttt 397  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||||||| |||||    
T  13415107 tgggatcgagttgtctttgagtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattctgaatt----ttatgctattgttttt 13415202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 40589012 - 40588754
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||  ||               | ||||||||||||||||    
T  40589012 agacgtggttgaagtgcaacgtggatgccgcgttccatgaacgtaaccatataacaacttttgcttg---------------tagcaggcaatttattcg 40588928  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||    |||||||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  40588927 ggctcaaacgaaatggca----gcgggcaaatataacagttttggagggggaggcagtagccgtactcgaggcccttcgttttgcggatgcaaacagatg 40588832  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
     || ||||||||||||||||| ||||| |||||||||||| ||| | |||||||||||||||||| ||||||||||||    
T  40588831 agaccgggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaatt 40588754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 23853822 - 23854095
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||| ||||||| | || ||||||||| |||||| |||||||| |||||| |||       |||||||| ||  |||||||||||||    
T  23853822 agacgtggttgaagtgcgatgtggacgccgcgttccatgaccgtaactatattacatcttttgcgtgttatgttagagactcccgtgggcaatttattcg 23853921  T
Q  201 act-caaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      | ||||||||||| ||    ||||  |||||||| |||||||||||| ||||||||||||||||| |||||| |||  ||||  ||||| ||||||||    
T  23853922 ggttcaaacgaaatgaca----gcggaaaaatatgacagttttggagggtgaggcagtagccttacttgaggccattcactttgttgatgctaacagatg 23854017  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
     ||  | |||||||| |||||||| || || ||||||||||||  | ||||||| ||||||||||||||||| |||||    
T  23854018 agactgagttgtcttcgagtccgactcatcaactctagtgcaagctctatcgtctccgggccatggtgattcagaatt 23854095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 380
Target Start/End: Complemental strand, 8451420 - 8451144
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||||||||| |||||||||| || ||||||||| ||||||||| ||||| ||||||  ||       ||||||||| |  | |||||||||||    
T  8451420 agacgtggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccattttacatcttttggatgttgtgttagagactcttgtggacaatttattcg 8451321  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||| ||| || |    |||||||||||||| ||| |||||||||||||||||||| ||||||||  || |||  || || ||||  ||| ||||    
T  8451320 ggctcaaacaaaaaggaa----gcgggcaaatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgtgaacggatg 8451225  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||| ||||||||||| ||||| || || |||||| ||||||||  | ||||||| || || ||||||||||| ||||||||    
T  8451224 ggaccgggttgtcttcgagtctgactcatctactttagtgcaagctttatcgtctccaggtcatggtgattcggaatttta 8451144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 380
Target Start/End: Complemental strand, 478234 - 478077
Alignment:
Q  223 cgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccg 322  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||  |||||  |||  || |||||||| |||||| |||| || || |    
T  478234 cgggcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctaatgtgaatagatgggaccgggttatcttcgaatctg 478135  T
Q  323 attcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    | ||| ||||||||||||||  | ||||||| |||||  |||||||||| | ||||||    
T  478134 actctactactctagtgcaagctctatcgtctccgggttatggtgattcggtatttta 478077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 101 - 370
Target Start/End: Original strand, 7127113 - 7127379
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| ||||||||||| |||||||||| || ||||||||||||||||| | ||||| | | ||  ||       |||||||||||  || ||||||||||    
T  7127113 agacatggttgaagtggaatgtggatgccgcgttccatgaacgtaaccgtcttacatcctctgcatgttgtgttagagactctcgggggaaatttattcg 7127212  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      | |||| ||||||| |     ||||||||||||| ||||||||||||||||| ||||||||||||||| ||  |||  ||||| ||||  ||||||||    
T  7127213 tgcacaaatgaaatggaaa----cgggcaaatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaacagatg 7127308  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgatt 370  Q
    ||| ||||||| ||| ||||| || | | ||||| ||||||||  | | ||||| ||||||||||||||||    
T  7127309 ggaccgggttgccttcgagtctgactatgctactttagtgcaagctctttcgtctccgggccatggtgatt 7127379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 377
Target Start/End: Complemental strand, 185768 - 185615
Alignment:
Q  223 cgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccg 322  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||||||  |  |||  ||||  ||||  || |||||| | ||||||||||  ||||| |    
T  185768 cgggcaaatatgacagttttgga-ggggaggaagtagccttactcgatactattcactttgttgatgtgaatagatggaaccgggttgtctacgagtctg 185670  T
Q  323 attcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | ||| ||||| ||||||||  | | ||||| |||| |||||||||||| |||||    
T  185669 actctgctactttagtgcaagctctttcgtctccggaccatggtgattcagaatt 185615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 9496797 - 9496834
Alignment:
Q  229 aatatgatagttttggagggggaggcagtagccttact 266  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  9496797 aatatgacagttttggagggtgaggcagtagccttact 9496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 101 - 376
Target Start/End: Complemental strand, 41835608 - 41835336
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||||| |||       |||||||||||||| |||||||||||    
T  41835608 agacgtggttgaagtgcaatgtggatgccacgttccttgaacgtaaccatattacaacttttgcgtgttgtgttagagactctcgcagacaatttattcg 41835509  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||| ||||| ||    || ||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  41835508 ggctcaaacaaaatgaca----gctggcaaatatgacagttttggagggggatgcagtagccttactcgagacccttcattttgcggatgcaaacagatg 41835413  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaat 376  Q
    ||| ||||||||||| |||| |||||| ||||||||||||||||   ||||||| ||||||||||||||||| ||||    
T  41835412 ggaccgggttgtcttcgagttcgattcatctactctagtgcaaacgctatcgtctccgggccatggtgattcggaat 41835336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 103 - 342
Target Start/End: Original strand, 21321419 - 21321655
Alignment:
Q  103 acgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga- 201  Q
    |||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||  ||       |||||||||||| || ||||||||||      
T  21321419 acgtggttgaagtgcaatgtggatgttgcgttccatgaccgtaaccatattacaacttttgcatgttgtattagagactctcgcgggaaatttattcggg 21321518  T
Q  202 ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatggg 301  Q
    ||||||||||||||||     ||||||||||||| |||||||||||||||| || |||||||||||||||||||||  ||| | ||||| ||||||||||    
T  21321519 ctcaaacgaaatggcaa----cgggcaaatatgacagttttggagggggagacaatagccttactcgaggcccttcacttttctgatgctaacagatggg 21321614  T
Q  302 atcgggttgtctttgagtccgattcttctactctagtgcaa 342  Q
    | ||||||||||| |||||||| || |||||||||||||||    
T  21321615 accgggttgtcttcgagtccgactcatctactctagtgcaa 21321655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 49951203 - 49951476
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| |||||||||||||||||||||| ||  |||||||| || |||||||||||| ||||||  ||       ||||| |||||| | |||||||||||    
T  49951203 agacatggttgaagtgcaatgtggatgccgcattccatgaccgcaaccatattacatcttttgcatgctgtgttagagattctcgcggccaatttattcg 49951302  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||    
T  49951303 ggctcaaacgaaatggca----gcgggcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatg 49951398  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | | || |||||||| |||||||| || |||||||||||||||  | |||| ||  |||||| ||||||||| |||||    
T  49951399 gaaccgagttgtcttcgagtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattcagaatt 49951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 101 - 371
Target Start/End: Complemental strand, 28538082 - 28537817
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||||||||||||||||||||  | ||||||||| |||||||||||||||  ||||| |||       |||||||| | | |||||||||||||    
T  28538082 agacgtggttgaagtgcaatgtggatgctgcgttccatgatcgtaaccatattacatattttgcgtgttgtgttagagactcccacgggcaatttattcg 28537983  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||    ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||  ||||| ||||||||    
T  28537982 ggctcaaacgaaatggca----gcgggaaaatatgatagttt--gagggggaggcagtagccttactcgaggcccttcactttgttgatgcgaacagatg 28537889  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    ||| |||||||| ||  ||||||| || |||||| ||||||||  | ||||||| | |||||||||||||||    
T  28537888 ggaccgggttgtgttcaagtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattc 28537817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 18442442 - 18442171
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||       |||||||| |   |||||||||||||    
T  18442442 agacgtggttgaagtgcaatgcggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttgtgttagagactcccatgggcaatttattcg 18442343  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      |||||||||||||| |    ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||| |  ||||| | ||| ||||||||    
T  18442342 ggctcaaacgaaatggaa----gcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggccctacactttgctgttgcgaacagatg 18442247  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | | |||||| | || |||| ||| || ||||  |||||||||  |||||||||   || |||||||||||| |||||    
T  18442246 gaaccgggttattttcgagtgcgactcatcta--ctagtgcaagctatatcgtctttggcccatggtgattcagaatt 18442171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 105 - 377
Target Start/End: Original strand, 55734903 - 55735172
Alignment:
Q  105 gtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ct 203  Q
    |||||||||||||||||||||||||| | ||||||| |  |||||||||||| |||||| |||       |||||||| |    ||||||| ||||  ||    
T  55734903 gtggttgaagtgcaatgtggatgtcgcgctccatgatctcaaccatattacatcttttgcgtgttgtgttagagactcccatgagcaatttgttcgggct 55735002  T
Q  204 caaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggat 303  Q
    |||||||||||| |    ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||  ||||  | ||| |||| |||| |     
T  55735003 caaacgaaatggaa----gcgagcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgttgttgcgaacacatggaac 55735098  T
Q  304 cgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||||| | || ||||||||||| |||||||||||||||  | |||||||  ||| |||||||||||| |||||    
T  55735099 cgggttattttcgagtccgattcatctactctagtgcaagctctatcgtcttcggaccatggtgattcagaatt 55735172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 104 - 371
Target Start/End: Original strand, 2064746 - 2065010
Alignment:
Q  104 cgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-c 202  Q
    |||||||||||||||||||||| | |  ||||||||| ||||||||||||||| | | || |||       |||||||| ||| |  ||||||||||  |    
T  2064746 cgtggttgaagtgcaatgtggacgccacgttccatgaccgtaaccatattacatcctctgcgtgttgtgttagagactcccgcggataatttattcgggc 2064845  T
Q  203 tcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatggga 302  Q
    |||||| ||||| ||    |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||  ||||| ||||  |||||||||      
T  2064846 tcaaacaaaatgaca----gcgggcaaatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaacagatggag 2064941  T
Q  303 tcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    |||||||||||||||||| || || ||||||||||  |||  | ||||||| || || |||||||||||    
T  2064942 tcgggttgtctttgagtcggactcatctactctagcccaagctctatcgtctccaggtcatggtgattc 2065010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 101 - 342
Target Start/End: Original strand, 56065519 - 56065757
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||| |||| | |||       |||||||| ||  ||||||| |||||    
T  56065519 agacgtggttgaagtgcaatgtggatgtcgtgtttcatgaccgtcaacatattacatctttcgcgtgttgttttagagactcccgtgggcaattcattcg 56065618  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||| ||     || |||||||||| ||||||||||||||||||||| ||||||||||| ||| |||  ||||| | ||  || | |||    
T  56065619 ggctcaaacgaaatgacaa----cgagcaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatg 56065714  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaa 342  Q
    ||| ||||||||||| |||||||| ||  ||||||||||||||    
T  56065715 ggaccgggttgtcttcgagtccgactcagctactctagtgcaa 56065757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 101 - 371
Target Start/End: Complemental strand, 51735268 - 51735002
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||| ||||||| || |||||||||  |||||||| ||||| ||||||||||       |||||||  ||  | |||||||||||    
T  51735268 agacgtggttgaagtgcaacgtggatgccgcgttccatgattgtaaccatcttacatcttttgtgtgttgtgttagagacttccgttgacaatttattcg 51735169  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      || |||||||||| ||    ||| |||||||||| ||||||||||||||||||||||||||||||||| ||| |||  ||||| ||||  || ||||     
T  51735168 ggcttaaacgaaatgaca----gcgtgcaaatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgtgaatagata 51735073  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    ||| || |||||||| ||||| |  || |||||||||||||||  | ||||||| | || ||||||||||||    
T  51735072 gga-cgagttgtcttcgagtcaggctcctctactctagtgcaagctctatcgtctctggaccatggtgattc 51735002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 223 - 377
Target Start/End: Complemental strand, 37246030 - 37245876
Alignment:
Q  223 cgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccg 322  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||  |||  |||||  |||  ||||||||||| ||||||||||| ||||| |    
T  37246030 cgggcaaatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaacagatgggaccgggttgtcttcgagtctg 37245931  T
Q  323 attcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | ||| ||||| ||||||||  | | ||||| | ||||||||||||||| |||||    
T  37245930 actctgctactttagtgcaagctctttcgtctctgggccatggtgattcagaatt 37245876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 29655962 - 29655690
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| ||||||||||| |||||||||| || ||||||||| ||||||| | ||||| ||||||| ||       |||| ||| ||  |||||||||||||    
T  29655962 agacatggttgaagtgtaatgtggatgccgcgttccatgatcgtaaccctcttacatcttttgt-tgttgtgttagaggctcccgtgggcaatttattcg 29655864  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||| ||||||||    ||||||||||||||  ||||||||||| |||||||||||||||||||| | | |||  ||||| ||||  ||||||||    
T  29655863 ggctcaaacaaaatggca----gcgggcaaatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtgaacagatg 29655768  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | | || |||||||| ||||| || |   ||||||||||||||  | |||| ||  |||||||||||||||| |||||    
T  29655767 gaaccgtgttgtcttcgagtctgactacgctactctagtgcaagctctatcatcttcgggccatggtgattcagaatt 29655690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 32577344 - 32577072
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| ||||||||||||||||||||||  | ||||||||| | ||||||| ||||| |||||| |||       ||||| || ||  |||||||||||||    
T  32577344 agacatggttgaagtgcaatgtggatgctgcgttccatgaccttaaccatcttacatcttttgcgtgttgtgttagagattcccgg-ggcaatttattcg 32577246  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||     |||||||||||||  |||||||||||||||| | ||||||||||||  ||  ||   ||||| |||| ||||| |||    
T  32577245 ggctcaaacgaaatggcaa----cgggcaaatatgactgttttggagggggaggtactagccttactcgctgctatttactttgctgatgtaaacatatg 32577150  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||  |||||||||| ||||| || ||| ||||||||||||||  |  ||||||  |||| ||||||||||| |||||    
T  32577149 ggactgggttgtcttcgagtctgactctgctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaatt 32577072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 101 - 380
Target Start/End: Complemental strand, 51259827 - 51259550
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||| ||||||||||||| || ||| ||||| ||| | ||||||||| |||| || ||       |||||||||||  ||||||| |||||    
T  51259827 agacgtggttgaactgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgtatgttgtgttagagactctcgtgggcaattcattcg 51259728  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggag-ggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagat 298  Q
      ||||||||||||||||     || |||||||||| |||||||||| ||||||||||| ||||||||||| | | |||  ||||| | ||  | ||| |    
T  51259727 ggctcaaacgaaatggcaa----cgagcaaatatgacagttttggaggggggaggcagttgccttactcgatgtcattcactttgctgttgggatcagtt 51259632  T
Q  299 gggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
     ||| | ||||||||| |||||||| ||  ||||||||||||||    |||||||  |||||||||||||||| ||||||||    
T  51259631 cggaccaggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaatttta 51259550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 26422762 - 26422626
Alignment:
Q  241 ttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgc 340  Q
    |||||| |||||||||||||||||||||| ||  ||   ||||| |||| |||||||||||||||||||||||| ||||| || |||  |||||||||||    
T  26422762 ttggagagggaggcagtagccttactcgatgctatttactttgctgatgtaaacagatgggatcgggttgtcttcgagtctgactctgatactctagtgc 26422663  T
Q  341 aaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||  | |||||||  |||| ||| ||||||| |||||    
T  26422662 aagctctatcgtcagcgggacatagtgattcagaatt 26422626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 340
Target Start/End: Original strand, 28426194 - 28426309
Alignment:
Q  225 ggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgat 324  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||  |||  ||||| |||| |||||||||||| |||||||||||  |||| ||     
T  28426194 ggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgac 28426293  T
Q  325 tcttctactctagtgc 340  Q
    |||  |||||||||||    
T  28426294 tctgatactctagtgc 28426309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 340
Target Start/End: Complemental strand, 49119576 - 49119461
Alignment:
Q  225 ggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgat 324  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||  |||  ||||| |||| |||||||||||| |||||||||||  |||| ||     
T  49119576 ggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgac 49119477  T
Q  325 tcttctactctagtgc 340  Q
    |||  |||||||||||    
T  49119476 tctgatactctagtgc 49119461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 371
Target Start/End: Complemental strand, 47226493 - 47226360
Alignment:
Q  238 gttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctag 337  Q
    |||||||||||||||| | ||| ||||||||||||  |||  ||||| ||||| |||||||| ||||| ||||| || |||||||| || |||||| |||    
T  47226493 gttttggagggggaggtaatagtcttactcgaggcttttcactttgctgatgcgaacagatgagatcgagttgtgttcgagtccgactcatctactttag 47226394  T
Q  338 tgcaaagtatatcgtccccgggccatggtgattc 371  Q
     ||||  | |||||||  | ||||||||||||||    
T  47226393 agcaagctctatcgtcttcaggccatggtgattc 47226360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 28426086 - 28426152
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtg 167  Q
    |||| ||| |||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||||||    
T  28426086 agacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtg 28426152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 49119684 - 49119618
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtg 167  Q
    |||| ||| |||||||||||||||||| || ||||||||| ||||||||| ||||| ||||||||||    
T  49119684 agacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatcttttgtgtg 49119618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 44936236 - 44936113
Alignment:
Q  247 ggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgcaaagta 346  Q
    ||||||||| ||||||||||||||  ||||   |||||  |||||||||||||  || ||||||| || |||||||| || | |||||||||||||| |     
T  44936236 ggggaggcaatagccttactcgagatcctttactttgctaatgcaaacagatgaaattgggttgtgttcgagtccgactcatttactctagtgcaaactc 44936137  T
Q  347 tatcgtccccgggccatggtgatt 370  Q
    ||||||   ||||||| |||||||    
T  44936136 tatcgttttcgggccacggtgatt 44936113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 37246149 - 37246104
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaa 146  Q
    |||| |||||||||||||||||||||| || ||||||||| |||||    
T  37246149 agacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaa 37246104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 115 - 377
Target Start/End: Complemental strand, 11375796 - 11375537
Alignment:
Q  115 tgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg-actcaaacgaaat 213  Q
    |||||||||||||  | ||||||||||||||||||||||||||||||||  ||       |||||||||||||||  ||||||||| |||||||||||||    
T  11375796 tgcaatgtggatgctgcgttccatgaacgtaaccatattacaacttttgcatgttgtgttagagactctcgcaggtgatttattcggactcaaacgaaat 11375697  T
Q  214 ggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtct 313  Q
    ||||    ||| | |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||    
T  11375696 ggca----gcgagtaaatatgacagttttggagggggagacagtagccttactcgaggcccttcattttgcggatgcaaatatatgggaccgggttgtct 11375601  T
Q  314 ttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||||||| ||||| |||| ||||||||||  | ||||||| |||| |||||||||||| |||||    
T  11375600 ttgagtctgattcatctattctagtgcaagctctatcgtctccggtccatggtgattcggaatt 11375537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 101 - 370
Target Start/End: Original strand, 25730698 - 25730964
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||||||||||  || ||||||||| |||||||||||||||| |||   |||       |||| ||| ||| || ||||||||||    
T  25730698 agacgtggttgaagtgcaatgtggattccgcgttccatgaccgtaaccatattacaattttcacgtgttgtgttagagtctcacgcgggaaatttattcg 25730797  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | ||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||    
T  25730798 agctcaaacgaaatggca----gcgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatg 25730893  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgatt 370  Q
    |||  | |||||||| |||||||| || |||||||||||||||  | ||||||| | ||| ||||||||||    
T  25730894 ggactgagttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgatt 25730964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 15989046 - 15988773
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||| ||||||||| ||| ||||||||| ||||||||| || ||||||||||||||||||| |||       ||||||| ||||  ||||||||||||    
T  15989046 agacgttgttgaagtgaaatatggatgtcgcgttccatgaccgcaaccatattacaacttttgcgtgttatgtcagagactttcgcgagcaatttattcg 15988947  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||    |||| ||||||||| |||||||||||||||||||||| |||||||||||||||||   ||||| ||||| |||| |||    
T  15988946 ggctcaaacgaaatggca----gcggacaaatatgacagttttggagggggaggcagtaaccttactcgaggccctttactttgctgatgcgaacatatg 15988851  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||| |||||||||||  ||||||  ||  ||||||||||||||  | |||||||  | |||||||||||||| |||||    
T  15988850 ggaccgggttgtcttcaagtccgtctcagctactctagtgcaatctctatcgtcttcaggccatggtgattcggaatt 15988773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 106 - 377
Target Start/End: Original strand, 4267994 - 4268262
Alignment:
Q  106 tggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc-gactc 204  Q
    ||||| |||||||| ||||| | || ||| | |||  |||||||||||||| |||||| |||       |||||||||||  |||||||||||| | |||    
T  4267994 tggttaaagtgcaacgtggacgccgcgtttcttgattgtaaccatattacatcttttgcgtgttgtgttagagactctcgtgggcaatttattcaggctc 4268093  T
Q  205 aaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatc 304  Q
    |||| ||||||||    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||  ||||| ||||| ||||| ||||| |    
T  4268094 aaacaaaatggca----gcgggcaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacaggtgggacc 4268189  T
Q  305 gggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||||| |||| |||||||| || |||||||||||||||  | |||| || ||||||||||||||||| |||||    
T  4268190 gggttttcttcgagtccgactcatctactctagtgcaagctctatcatctccgggccatggtgattcggaatt 4268262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 106 - 380
Target Start/End: Original strand, 27292329 - 27292600
Alignment:
Q  106 tggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ctc 204  Q
    ||||||||||||||||||||||||  |||||||||  ||||||||||||||  |||||  ||       |||||||||||  |||||||||||||  |||    
T  27292329 tggttgaagtgcaatgtggatgtcacgttccatgatagtaaccatattacatattttgcatgttgtgttagagactctcgtgggcaatttattcgggctc 27292428  T
Q  205 aaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatc 304  Q
    |||| ||||||||    |||| ||||||| || |||||| ||||||||||| |||||||||| || |||||||  ||||| ||||  ||||||||||| |    
T  27292429 aaacaaaatggca----gcggacaaatattattgttttgaagggggaggcaatagccttactagatgcccttcactttgctgatgataacagatgggacc 27292524  T
Q  305 gggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    |||||||||| |||| ||| || ||| |||||||||||| | ||||||| || |||||||||||||  ||||||||    
T  27292525 gggttgtcttcgagttcgactcatctgctctagtgcaaactctatcgtctccaggccatggtgatttggaatttta 27292600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 8387976 - 8388252
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc- 199  Q
    ||||||||||||||| ||||||||||| || ||| ||||| ||| |  |||||||| |||| | |||       |||||||||||  ||||||| ||||     
T  8387976 agacgtggttgaagtacaatgtggatgccgcgtttcatgaccgttaaaatattacatctttcgcgtgttgtgttagagactctcgtgggcaattcattca 8388075  T
Q  200 gactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | ||||||||||||||||     ||  ||||||||| ||||||||||||||||||||| ||||||||||| ||| |||  ||||||| ||  ||||||||    
T  8388076 ggctcaaacgaaatggcaa----cgaacaaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcggttgggaacagatg 8388171  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||| ||||||||||| |||||||| ||  ||||||||||||||    ||||||| || |||||||||||||| ||||||||    
T  8388172 ggaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccaggccatggtgattcagaatttta 8388252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 101 - 371
Target Start/End: Original strand, 20204845 - 20205112
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc- 199  Q
    |||| |||||||||||||||||||||| || ||||||||| | ||||||||||||| |||||   |        |||||||| ||| || ||||||| |     
T  20204845 agacatggttgaagtgcaatgtggatgccgcgttccatgaccataaccatattacatcttttacattttgtgctagagactcccgcgggaaatttatcca 20204944  T
Q  200 gactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | ||||||||||||||||     ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||  ||||  | ||| ||||||||    
T  20204945 ggctcaaacgaaatggcaa----cgggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactttgttgttgcgaacagatg 20205040  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    | | || |||||||| |||||||| || |||||||||||||||  | |||| || ||||| |||||||||||    
T  20205041 gaaccgagttgtcttcgagtccgactcatctactctagtgcaagctctatcctctccgggtcatggtgattc 20205112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 22767554 - 22767281
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| |||||||||||||||||||||| || |||||||||  |||| ||| ||||| |||||| |||       ||||| || ||  |||||||||||||    
T  22767554 agacatggttgaagtgcaatgtggatgccgcgttccatgacagtaatcatcttacatcttttgcgtgttgtgttagagattcccgggggcaatttattcg 22767455  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||     |||||||||||||  |||||||||||||||||||||||||||||||  ||  |||  ||||| |||| |||||||||    
T  22767454 ggctcaaacgaaatggcaa----cgggcaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatg 22767359  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||| ||||||||||| ||||  || |||  |||||||||||||  | |||||||  |||| |||||| |||| |||||    
T  22767358 ggaccgggttgtcttcgagtttgactctgatactctagtgcaagctctatcgtcagcgggacatggtaattcagaatt 22767281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 380
Target Start/End: Complemental strand, 26597755 - 26597478
Alignment:
Q  100 aagacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc 199  Q
    |||||||||||||||||||||||||||| || ||| ||||| | | | ||||||||| |||| | |||       |||||||| ||  | ||||| ||||    
T  26597755 aagacgtggttgaagtgcaatgtggatgccgcgtttcatgatcatcaacatattacatctttcgcgtgttgtgttagagactcccgtggacaattcattc 26597656  T
Q  200 ga-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagat 298  Q
    |  ||||||||||||||||     || |||||||||| | ||||||||||||||||||| ||||||||||| ||| |||  ||||| | ||  || ||||    
T  26597655 gggctcaaacgaaatggcaa----cgagcaaatatgacaattttggagggggaggcagttgccttactcgatgccattcactttgcagttgggaatagat 26597560  T
Q  299 gggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    | || ||||||||||| |||||||| ||  ||||||||||||||    ||||||| ||||||||||||||||| ||||||||    
T  26597559 gagaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaatttta 26597478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 269
Target Start/End: Original strand, 12660210 - 12660371
Alignment:
Q  105 gtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc-gact 203  Q
    ||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |||       ||||||| ||   | |||||||||| | ||    
T  12660210 gtggttgaagtgcaatgtggatgccgcgttccatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactttcatggacaatttattcgggct 12660309  T
Q  204 caaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcga 269  Q
    |||||||||||    ||||||||||||||||| ||| || ||| |||||||||||| |||||||||    
T  12660310 caaacgaaatg----gcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactcga 12660371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 377
Target Start/End: Complemental strand, 41941030 - 41940761
Alignment:
Q  105 gtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ct 203  Q
    ||||||||||||||||||||||| || ||||||||| |||||| || ||||| ||||||||||       | |||||| ||  || ||||||||||| ||    
T  41941030 gtggttgaagtgcaatgtggatgccgcgttccatgaccgtaactatcttacatcttttgtgtgtagtgttaaagactcccgtgggaaatttattcgagct 41940931  T
Q  204 caaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggat 303  Q
    ||||||||||| |||  |   |  |||||||| |||||||||||||||| || ||||||||||| | | | |||  |||||  |||  |||| |  |||     
T  41940930 caaacgaaatgacatata---gaaaaatatgacagttttggagggggagacaatagccttactcaatgtcattcactttgctcatgtgaaca-actggac 41940835  T
Q  304 cgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||||||||||| |||||||| ||  ||||||||||||||| | ||||||| | || |||| ||||||| |||||    
T  41940834 cgggttgtcttcgagtccgactcaactactctagtgcaaactctatcgtctctggaccattgtgattcagaatt 41940761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 377
Target Start/End: Complemental strand, 27533195 - 27532930
Alignment:
Q  110 tgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaactttt-gtgtgnnnnnnnagagactctcgcaggcaatttattcga-ctcaaa 207  Q
    ||||||| ||||||||||||| ||||||||| ||||||||  ||||| ||||| | |||       |||||||| ||  |||||||||||||  ||||||    
T  27533195 tgaagtgtaatgtggatgtcgcgttccatgatcgtaaccagtttacatctttttgcgtgttgtgttagagactcccgtgggcaatttattcgggctcaaa 27533096  T
Q  208 cgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcggg 307  Q
    |||||||| |    || || |||||| | ||||||||||||||||||| |||| ||| |||| | | |||  ||||| ||||  || |||||||| ||||    
T  27533095 cgaaatggta----gcaggaaaatataacagttttggagggggaggcaatagctttattcgatgtcattcactttgctgatgtgaatagatgggaccggg 27533000  T
Q  308 ttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||| || |||||||| | | || || ||||||| | | ||||||| ||||| ||||||||||| |||||    
T  27532999 ttgttttcgagtccgactttgcttctttagtgcagactttatcgtctccgggtcatggtgattcagaatt 27532930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 377
Target Start/End: Complemental strand, 34652436 - 34652278
Alignment:
Q  219 gcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgag 318  Q
    |||||| |||||||||| ||| ||| | ||||||  | || |||||||||| ||| |||  ||||| ||||  ||||||||||||||||||||||| |||    
T  34652436 gcagcgagcaaatatgacagtgttgtaaggggagataataaccttactcgatgccattcactttgccgatgtgaacagatgggatcgggttgtcttcgag 34652337  T
Q  319 tccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
     |||| ||  ||||||||||||||  | || |||| | ||||||||||||||| |||||    
T  34652336 cccgactcgactactctagtgcaagctctaccgtctctgggccatggtgattcagaatt 34652278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 340
Target Start/End: Original strand, 37448028 - 37448251
Alignment:
Q  114 gtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg-actcaaacgaaa 212  Q
    |||| |||||||||||||||||||||| | ||||||| ||||| | ||| | ||       |||||||||||  | |||| |||||| |||||||| |||    
T  37448028 gtgcgatgtggatgtcgtgttccatgaccataaccatcttacatcgtttatatgttgtgttagagactctcgtggacaatgtattcggactcaaacaaaa 37448127  T
Q  213 tggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtc 312  Q
    |||||    ||| ||||| |||| ||| ||| | |||||||| |||||||||||||| | | |||  ||||| ||||  ||||||||| | |||||||||    
T  37448128 tggca----gcgtgcaaacatgacagtgttgaaaggggaggcggtagccttactcgatgtcattcactttgctgatgtgaacagatggaaccgggttgtc 37448223  T
Q  313 tttgagtccgattcttctactctagtgc 340  Q
    || |||| | ||||  ||||||||||||    
T  37448224 ttcgagttcaattcaactactctagtgc 37448251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 16074626 - 16074675
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccat 150  Q
    |||||||||  |||||||||||||||| || |||||||||||||||||||    
T  16074626 agacgtggtcaaagtgcaatgtggatgccgcgttccatgaacgtaaccat 16074675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 18673747 - 18673775
Alignment:
Q  73 ttaacgttaaatacattttgttccaacaa 101  Q
    |||||||||||||||||||||||||||||    
T  18673747 ttaacgttaaatacattttgttccaacaa 18673775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 377
Target Start/End: Original strand, 32632546 - 32632678
Alignment:
Q  245 agggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgcaaag 344  Q
    |||||||| || || |||||||||||||| ||| |||| | ||| | || ||||   | ||||||||||||||||| || || |||||| ||||| ||      
T  32632546 agggggagacaataaccttactcgaggcctttcattttactgatacgaatagattaaaccgggttgtctttgagtctgactcatctactttagtgtaagc 32632645  T
Q  345 tatatcgtccccgggccatggtgattctgaatt 377  Q
    | ||||||| ||| ||||| ||||||| |||||    
T  32632646 tttatcgtctccgagccatagtgattcagaatt 32632678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 101 - 342
Target Start/End: Original strand, 88449 - 88687
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| ||||||||||||||||||||||  | ||||||||| ||||||||||||||||||||||  ||       |||||||||||| |||||||||||||    
T  88449 agacatggttgaagtgcaatgtggatgctgcgttccatgaccgtaaccatattacaacttttgcatgttgtgttagagactctcgcgggcaatttattcg 88548  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      |||||| |||||||||      |||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||  ||||| ||||||||    
T  88549 ggctcaaatgaaatggcaat----gggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgctaacagatg 88644  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaa 342  Q
    ||| ||||||||||| |||||||| || |||||||||||||||    
T  88645 ggaccgggttgtcttcgagtccgactcatctactctagtgcaa 88687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 101 - 405
Target Start/End: Complemental strand, 12130935 - 12130638
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||||||||||| |  ||||||||| ||||||||||||  | |||||| |||       |||||||| ||| ||||| |||||||    
T  12130935 agacgtggttgaagtgcaatgtggatgccccgttccatgaccgtaaccatattctatcttttgggtgttgtgttagagactcccgcgggcaaattattcg 12130836  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||| ||    ||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||  ||||| |||||||| |||||    
T  12130835 ggctcaaacgaaatgaca----gcgagcaaatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgcaaatagatg 12130740  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaattttaattatgctattatttttag 399  Q
    | |||||||| |||| ||||| || || ||||||||||| |||  | |||| ||  |||| ||||||||||| |||||     ||||||||||||| |||    
T  12130739 gaatcgggttatcttcgagtctgactcatctactctagtccaagctctatcatcttcgggacatggtgattcagaatt----ctatgctattatttctag 12130644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 380
Target Start/End: Complemental strand, 34696086 - 34695925
Alignment:
Q  219 gcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgag 318  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||| ||||  || |||||||| ||||||||||| |||    
T  34696086 gcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgag 34695987  T
Q  319 tccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||||| ||  ||||||||||||||    ||||||| ||||| ||||||||||| ||||||||    
T  34695986 tccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaatttta 34695925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 380
Target Start/End: Complemental strand, 34718498 - 34718337
Alignment:
Q  219 gcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgag 318  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||  ||||| ||||  || |||||||| ||||||||||| |||    
T  34718498 gcagcgggcaaatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgag 34718399  T
Q  319 tccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||||| ||  ||||||||||||||    ||||||| ||||| ||||||||||| ||||||||    
T  34718398 tccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaatttta 34718337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 333
Target Start/End: Complemental strand, 18345783 - 18345555
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| |||||||||||||||||||| |    ||||||||| ||||||||||||||  |||||| |||       |||||||  ||  || |||||||| |    
T  18345783 agacatggttgaagtgcaatgtggacgcaacgttccatgagcgtaaccatattacttcttttgcgtgttgtgttagagacttccgtgggtaatttatttg 18345684  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | |||||||||||||| |     ||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||    
T  18345683 aactcaaacgaaatggtaa----cggacaaatatgacagttttg-agggggaggcagtagccttactcgaggcccttcactttgctgatgctaacagatg 18345589  T
Q  300 ggatcgggttgtctttgagtccgattcttctact 333  Q
    ||||||  ||||||| || ||||| || ||||||    
T  18345588 ggatcgaattgtcttcgaatccgactcatctact 18345555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 1418161 - 1418044
Alignment:
Q  221 agcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtc 320  Q
    |||||||||||||||  ||| || |||| ||| ||||||||||||||||||   ||   ||||| |||||||||||||||||  |||||||||| |||||    
T  1418161 agcgggcaaatatgacggttatgaagggagagacagtagccttactcgaggtaatttgatttgctgatgcaaacagatgggactgggttgtcttcgagtc 1418062  T
Q  321 cgattcttctactctagt 338  Q
     || || |||||||||||    
T  1418061 tgactcatctactctagt 1418044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 13110006 - 13109900
Alignment:
Q  264 actcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccat 363  Q
    ||||||||||||||  || || ||||| | |||||||||   ||||||||| |||||||| ||||||||||||||| ||  | |||||||  ||||||||    
T  13110006 actcgaggcccttcacttagctgatgcgatcagatgggacatggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccat 13109907  T
Q  364 ggtgatt 370  Q
    |||||||    
T  13109906 ggtgatt 13109900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 9709942 - 9710001
Alignment:
Q  227 caaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcgg 286  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||| |||  |||||||    
T  9709942 caaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcgg 9710001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 377
Target Start/End: Original strand, 22845602 - 22845699
Alignment:
Q  280 tttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||||| ||||| ||||||||||| ||||||||||| |||||| | |  |||||||||||||||  | ||||||| || |  ||||||||||| |||||    
T  22845602 tttgctgatgcgaacagatgggaccgggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaatt 22845699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 11292157 - 11292121
Alignment:
Q  306 ggttgtctttgagtccgattcttctactctagtgcaa 342  Q
    |||||||||||||||||| || |||||||||||||||    
T  11292157 ggttgtctttgagtccgactcatctactctagtgcaa 11292121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 26198706 - 26198742
Alignment:
Q  227 caaatatgatagttttggagggggaggcagtagcctt 263  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  26198706 caaatatgacagttttggagggggatgcagtagcctt 26198742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 16731823 - 16732096
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| |||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||  ||       ||||| || ||| |||||||||||||    
T  16731823 agacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatttattcg 16731922  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||    | |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||  | ||| ||||| ||||||||    
T  16731923 ggctcaaacgaaatggca----gagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatg 16732018  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | | || |||||||| |||||||| || |||||||||||||||  | |||| || ||||||||||||||||| |||||    
T  16732019 gaaccgagttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaatt 16732096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 17709957 - 17710230
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| |||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||  ||       ||||| || ||| |||||||||||||    
T  17709957 agacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatcttttgcatgttgtgttagagattcccgcgggcaatttattcg 17710056  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||    | |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||  | ||| ||||| ||||||||    
T  17710057 ggctcaaacgaaatggca----gagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatg 17710152  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | | || |||||||| |||||||| || |||||||||||||||  | |||| || ||||||||||||||||| |||||    
T  17710153 gaaccgagttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaatt 17710230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 103 - 377
Target Start/End: Original strand, 16098382 - 16098653
Alignment:
Q  103 acgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga- 201  Q
    ||||||||||||||||||||||| |    ||||||||| ||||||||||||||  |||||| |||       |||||||| |  ||||||||||||||      
T  16098382 acgtggttgaagtgcaatgtggacgcatcgttccatgaccgtaaccatattacttcttttgcgtgttgtgttagagactcccataggcaatttattcggg 16098481  T
Q  202 ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatggg 301  Q
    |||||||||||||| |     ||  ||||||||| | |||||||||| |||| |||||||||||| ||||||||||  ||||| ||||| |||| |||||    
T  16098482 ctcaaacgaaatggaaa----cgaacaaatatgacaattttggagggagaggtagtagccttactagaggcccttcaatttgctgatgctaacaaatggg 16098577  T
Q  302 atcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | ||||||||||| |||||||| || ||||||||||| |||  |  |||||| ||||||||||||||||| |||||    
T  16098578 accgggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaatt 16098653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 105 - 371
Target Start/End: Original strand, 1581509 - 1581773
Alignment:
Q  105 gtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ct 203  Q
    |||||||||||||||||||||||  | ||||||||| | ||||||||||||| |||||| |||       ||||||||  || |  | ||||| ||  ||    
T  1581509 gtggttgaagtgcaatgtggatgctgcgttccatgaccataaccatattacatcttttgcgtgttgtgctagagactccagcggatagtttatccgggct 1581608  T
Q  204 caaacgaaatggcatgcagcgggcaaatatgatagttttggaggggg-aggcagtagccttactcgaggcccttccttttgcggatgcaaacagatggga 302  Q
    ||||||||||||||    | |||||||||| |||||||| ||||||| | |||||||||||||||||||||||||  ||||| ||||| |||||||| ||    
T  1581609 caaacgaaatggca----gagggcaaatattatagtttttgaggggggatgcagtagccttactcgaggcccttcactttgctgatgcgaacagatgaga 1581704  T
Q  303 tcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    ||||||| | || |||||| | || ||||| ||| |||||| | ||||||| |||| ||||||||||||    
T  1581705 tcgggttctattggagtccaactcatctacactaatgcaaactctatcgtctccggaccatggtgattc 1581773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 9328898 - 9328626
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| ||||||||||| |||||||||| || ||||||||| ||||||||| ||||| | |||| |||       ||||| || ||  | |||||||||||    
T  9328898 agacatggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccatcttacatcatttgcgtgttgtgttagagattcccgg-gacaatttattcg 9328800  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | ||||||||||||||||     |||| ||||||||  |||||||||||||||||||||||||||||||  ||  |||  ||||| |||| |||||||||    
T  9328799 agctcaaacgaaatggcaa----cgggaaaatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatg 9328704  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||| ||||||||||| ||||| || |||  |||||||||||||  | |||||||  |||| |||||| |||| |||||    
T  9328703 ggaccgggttgtcttggagtctgactctgatactctagtgcaagctctatcgtcagcgggacatggtaattcagaatt 9328626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 22289131 - 22289407
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||| |||||||||||||||| || ||| ||||| ||| | ||||||||| |||| | |||       ||||| || ||  ||||||| |||||    
T  22289131 agacgtggtttaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagattcccgtgggcaattcattcg 22289230  T
Q  201 -actcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
     ||||| |||||||||||     || |||||||||| |||||||||||||||||  || ||||||||||| ||| |||  ||||| | ||  |||| |||    
T  22289231 gactcagacgaaatggcaa----cgagcaaatatgacagttttggagggggaggtggttgccttactcgatgccattcactttgccgttgggaacaaatg 22289326  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||| |||| |||||| |||||||| ||  ||||||||||||||    ||||||| ||||||||||||||||| ||||||||    
T  22289327 ggaccgggctgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaatttta 22289407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 101 - 320
Target Start/End: Original strand, 17877298 - 17877514
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||| |||||||||||||||| |||||||||  ||||||||||||||  | ||| |||       | |||||| |   || | || |||||    
T  17877298 agacgtggttgaaatgcaatgtggatgtcgcgttccatgattgtaaccatattacatttgttgcgtgtggcgttatagactcccatgggaagttcattcg 17877397  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      |||||||||||| |||    ||||| |||||||| ||| ||||||||||||| ||||||||||||| |||||||||  ||| |  |||| ||||||||    
T  17877398 tgctcaaacgaaatcgca----gcggggaaatatgacagtattggagggggaggaagtagccttactcaaggcccttcactttacaaatgcgaacagatg 17877493  T
Q  300 ggatcgggttgtctttgagtc 320  Q
    | ||||||||||||| |||||    
T  17877494 gaatcgggttgtcttcgagtc 17877514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 377
Target Start/End: Complemental strand, 29201136 - 29200979
Alignment:
Q  220 cagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagt 319  Q
    |||||| ||||||||| ||||||||||||||||| || |   ||||| || | | |||  ||||| ||||  ||||||||| | ||||||||||| ||||    
T  29201136 cagcggacaaatatgacagttttggagggggaggtagcatgtttacttgatgtcattcactttgctgatgtgaacagatggaaacgggttgtcttcgagt 29201037  T
Q  320 ccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    | || ||  ||||||||||||||  | ||||||| | ||||||||||||||| |||||    
T  29201036 ctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattcagaatt 29200979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 30824646 - 30824557
Alignment:
Q  228 aaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagt 319  Q
    |||||||| ||||||| ||||  |||||||||||||||||||||||||||  ||| |  |||| ||||||||||||| ||||||||| ||||    
T  30824646 aaatatgacagttttgaaggg--aggcagtagccttactcgaggcccttcacttttctaatgcgaacagatgggatcaggttgtcttcgagt 30824557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 380
Target Start/End: Complemental strand, 30493779 - 30493631
Alignment:
Q  231 tatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttct 330  Q
    ||||| ||||||||||||| |||||||||||||||| || | | |||  || || |||   |||||||| || | ||||||||| |||||||| ||   |    
T  30493779 tatgacagttttggagggg-aggcagtagccttacttgatgtcgttcacttagctgatatgaacagatgagaccaggttgtcttcgagtccgactcaatt 30493681  T
Q  331 actctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||||||||||||  | |||||||  |||||||||||||||| ||||||||    
T  30493680 actctagtgcaagctctatcgtcttcgggccatggtgattcagaatttta 30493631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 3601739 - 3601818
Alignment:
Q  301 gatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||||||||||| || |||||||| || |||||||||||||||  | ||||||| | || |||||||||||| ||||||||    
T  3601739 gatcgggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaatttta 3601818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 277
Target Start/End: Original strand, 3601684 - 3601724
Alignment:
Q  237 agttttggagggggaggcagtagccttactcgaggcccttc 277  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  3601684 agttttggagggggaggtggtagccttactcgaggcccttc 3601724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 380
Target Start/End: Original strand, 44480893 - 44480966
Alignment:
Q  307 gttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    |||||||| |||||||| ||  |||||||| ||||||   ||||||| ||||| ||||||||||| ||||||||    
T  44480893 gttgtcttcgagtccgactccgctactctactgcaaacgttatcgtctccgggtcatggtgattcggaatttta 44480966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 106 - 377
Target Start/End: Original strand, 44527148 - 44527416
Alignment:
Q  106 tggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ctc 204  Q
    ||||| |||||||||||||| | || |||||||||  |||||||||||||| |||||| |||       ||||||||| |  |||||||||||||  |||    
T  44527148 tggttaaagtgcaatgtggacgccgcgttccatgactgtaaccatattacatcttttgcgtgttgtgttagagactcttgtgggcaatttattcgggctc 44527247  T
Q  205 aaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatc 304  Q
    |||| ||||||||    |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||  ||||| ||||| ||||||||||| |    
T  44527248 aaacaaaatggca----gcggacaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggacc 44527343  T
Q  305 gggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||||||||| |||||||| || |||||||| ||||||  | |||| || ||||||||||||||||| |||||    
T  44527344 gggttgtcttcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaatt 44527416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 5609229 - 5609502
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||| | |||       |||||||| | |  ||||||||||||    
T  5609229 agacgtggttgaagtgcaatgtggatgtcgcgttccatgactgtaaccatattacaactttcgcgtgctgtgctagagactcacacgagcaatttattcg 5609328  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      |||||||   ||| ||    |||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||  ||||  | ||| ||||||||    
T  5609329 ggctcaaactctatgaca----gcggacaaatatgatagttttgaagggggaggcagtagccttactcgaggtccttcactttgatgttgcgaacagatg 5609424  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
     |||||||||||||| |||| ||| || |||||||||||||||| | ||||||| | ||| ||||||||||| |||||    
T  5609425 agatcgggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaatt 5609502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 105 - 338
Target Start/End: Complemental strand, 16817092 - 16816863
Alignment:
Q  105 gtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ct 203  Q
    ||||||||||||||||| ||| | || ||||||||   |||||||||||||| |||||||||        ||||||||||||  ||||||||||||| ||    
T  16817092 gtggttgaagtgcaatgcggacgccgcgttccatgtctgtaaccatattacatcttttgtgtattgttttagagactctcgcgtgcaatttattcgagct 16816993  T
Q  204 caaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggat 303  Q
    ||| | ||||||||    | |||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||     
T  16816992 caatcaaaatggca----gtgggcaaatatgacaattttggagggg-aggcagtagccttactcgaggcccttcattttgctgatgcaaacagatgggac 16816898  T
Q  304 cgggttgtctttgagtccgattcttctactctagt 338  Q
    ||||||||||| |||||||| || |||||||||||    
T  16816897 cgggttgtcttcgagtccgactcgtctactctagt 16816863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 377
Target Start/End: Original strand, 52109343 - 52109616
Alignment:
Q  100 aagacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc 199  Q
    ||||||||||||||||| |||||||| || ||||||||||| ||||| ||| ||| | ||||||  ||       ||||||||  |  | ||||||||||    
T  52109343 aagacgtggttgaagtgtaatgtggacgttgtgttccatgaccgtaatcatcttatatcttttgcatgttgtgttagagactcctgtggacaatttattc 52109442  T
Q  200 -gactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagat 298  Q
     | ||||||||||||||||    |||||||||||||||  ||||||||||||| ||||||||||||||||||| |||||  ||||| ||||| |||||||    
T  52109443 aggctcaaacgaaatggca----gcgggcaaatatgatcattttggagggggatgcagtagccttactcgaggtccttcactttgctgatgctaacagat 52109538  T
Q  299 gggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||||| |||||||||||||||  ||||| ||||||||||| |||  | ||| ||| |||| |||||||||||| |||||    
T  52109539 gggat-gggttgtctttgagtgtgattcatctactctagtacaagctctattgtctccggaccatggtgattcggaatt 52109616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 4395049 - 4395321
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||| |||||||||||||||| | || ||||||||| ||||||||||| ||||||||||  ||       |||||||||||  |||||||||| ||    
T  4395049 agacgtggctgaagtgcaatgtggaagccgcgttccatgaccgtaaccatatcacaacttttgcatgctgtgttagagactctcgtgggcaatttatccg 4395148  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||| ||||||||||    |||||||||||||| ||||||| ||||| ||||| |||||||||||||||||||||  ||||| ||||| || |||||    
T  4395149 ggctcaatcgaaatggca----gcgggcaaatatgagagttttgaagggg-aggcactagccttactcgaggcccttcactttgctgatgcgaatagatg 4395243  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||| | |||| |||| |||||| | || |||||||||||||||  | ||||||| |  || ||||||||||| |||||    
T  4395244 ggaccaggttatcttcgagtccaactcatctactctagtgcaagctctatcgtctcaaggtcatggtgattcagaatt 4395321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 362
Target Start/End: Original strand, 25682541 - 25682799
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttat-tc 199  Q
    |||| |||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||| |||       |||||||| ||  |||||||||| |     
T  25682541 agacatggttgaagtgcaatgtggatgccgtgtttcatgaacgtaaccatcttacatcttttgcgtgttgtgttagagactcccgtgggcaatttatctg 25682640  T
Q  200 gactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | ||||||||||||||||     ||||||||||||| ||| ||||||||||||||||||||||||||||| | | |||  |||||  |||  ||||||||    
T  25682641 ggctcaaacgaaatggcaa----cgggcaaatatgacagtgttggagggggaggcagtagccttactcgatgtcattcactttgctaatgtgaacagatg 25682736  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggcca 362  Q
    ||| |||| |||||| ||||  || ||  |||||||||| |||  | ||||||| ||||||||    
T  25682737 ggaccgggctgtcttcgagtttgactcagctactctagtacaagctctatcgtctccgggcca 25682799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 101 - 380
Target Start/End: Complemental strand, 48950021 - 48949745
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    ||||||||||||||||||||||||||| || ||| ||||| ||| | ||||||||| |||| | |||       |||||||| ||  ||||||| |||||    
T  48950021 agacgtggttgaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgttggcaattcattcg 48949922  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||||||     || |||||||||| ||||||||||||||||||||| ||||||||||| ||  |||  ||||  | ||  ||||||||    
T  48949921 ggctcaaacgaaatggcaa----cgagcaaatatgaaagttttggagggggaggcagttgccttactcgatgcgattcactttgttgttgggaacagatg 48949826  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||| ||||||||||| |||| | | ||  ||||||||||||||    ||||||| ||||||||||||||||| ||||||||    
T  48949825 ggaccgggttgtcttcgagttcaactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaatttta 48949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 51113205 - 51113481
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||| |||||||||||||||| |||||| ||||| ||| | ||||||||| |||| | |||       |||||||| ||  ||||||| |||||    
T  51113205 agacgtggttaaagtgcaatgtggatgccgtgtttcatgaccgtcaacatattacatctttcgcgtgttgtgttagagactcccgtgggcaattcattcg 51113304  T
Q  201 -actcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
     |||||||||||||||||     || |||||||| |  |||||||||||||||||||| ||||||||||| | | |||  ||||  | ||  ||||||||    
T  51113305 gactcaaacgaaatggcaa----cgagcaaatataaccgttttggagggggaggcagttgccttactcgatgtcattcactttgttgttgggaacagatg 51113400  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    ||| ||||||||||| |||||||| ||  ||||||||||||||    ||||||| | ||||||||||||||| || |||||    
T  51113401 ggaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctctgggccatggtgattcggagtttta 51113481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 101 - 371
Target Start/End: Original strand, 36733584 - 36733853
Alignment:
Q  101 agacgtggttgaagtgcaat--gtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttatt 198  Q
    |||| |||||||||||||||  ||||||| || ||| |||||   ||||||| ||||| ||||||||||       |||||||||||  | |||||||||    
T  36733584 agacatggttgaagtgcaatatgtggatgccgcgtttcatgactataaccatcttacaccttttgtgtgttgtgttagagactctcgtggacaatttatt 36733683  T
Q  199 cga-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacaga 297  Q
    ||  ||||||| ||||| ||     |||| |||||||  ||||||||||||||||||||||| ||||||| | |   |||  ||||| ||||  |||| |    
T  36733684 cgggctcaaacaaaatgacaa----cgggtaaatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgtgaacaaa 36733779  T
Q  298 tgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    ||||| ||||||||||| ||||| || |||   ||||||||||||  ||||||||| |||||||||| ||||||    
T  36733780 tgggaccgggttgtcttcgagtctgactctataactctagtgcaagctatatcgtctccgggccatgatgattc 36733853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 342
Target Start/End: Original strand, 48166158 - 48166365
Alignment:
Q  132 gttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcga-ctcaaacgaaatggcatgcagcgggcaaa 230  Q
    ||||||||| ||||||||| ||||| ||||||||||       |||||||| ||  | |||||||||||  |||||| |||||||||    ||| |||||    
T  48166158 gttccatgaccgtaaccatcttacatcttttgtgtgttgtgttagagactcccgtggtcaatttattcgggctcaaatgaaatggca----gcgagcaaa 48166253  T
Q  231 tatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttct 330  Q
    ||||| |||||||||| ||||| || ||||||||||||| | | |||  |||||  |||  || | |||||||||||||||||| ||||| |||||  ||    
T  48166254 tatgacagttttggagtgggagacaatagccttactcgatgtcattcactttgcttatgtgaatatatgggatcgggttgtcttcgagtctgattcagct 48166353  T
Q  331 actctagtgcaa 342  Q
    |||||| |||||    
T  48166354 actctattgcaa 48166365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 371
Target Start/End: Original strand, 44602765 - 44602909
Alignment:
Q  227 caaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattc 326  Q
    ||||||||| | |||||||||||||| || ||| ||||||||| | | |||  ||| | ||||  |||||||| || ||||||| ||| |||||  | ||    
T  44602765 caaatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaacagatgagaccgggttgccttcgagtctaactc 44602864  T
Q  327 ttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
      ||||||||||||||  | |||| || |||||||||||||||||    
T  44602865 cgctactctagtgcaagctctatcatctccgggccatggtgattc 44602909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 106 - 377
Target Start/End: Original strand, 53496927 - 53497195
Alignment:
Q  106 tggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc-gactc 204  Q
    ||||| |||||||||||||| | || ||||||||| ||||||||||||||| |||||| |||       ||||||||| |  |||||||||||| | |||    
T  53496927 tggttaaagtgcaatgtggacgccgcgttccatgaccgtaaccatattacatcttttgcgtgttgtgttagagactcttgtgggcaatttattcgggctc 53497026  T
Q  205 aaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatc 304  Q
    |||| |||||     |||||| ||||| ||| |||||| ||||||||||||||||||||||| ||||||||||  ||||| ||||| ||||||||||| |    
T  53497027 aaacaaaatg----acagcggacaaatgtgacagtttttgagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggacc 53497122  T
Q  305 gggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||||||||| |||||||| || |||||||| ||||||  | ||||||| ||||||||||||||||| |||||    
T  53497123 gggttgtcttcgagtccgactcatctactcttgtgcaagctctatcgtctccgggccatggtgattcggaatt 53497195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 101 - 380
Target Start/End: Original strand, 46007191 - 46007465
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnn-agagactctcgcaggcaatttattc 199  Q
    ||||||||||||||||||||||||||| |||||||||| |  |||||||| ||| | |||||| |||        |||||||||||  |  |||||||||    
T  46007191 agacgtggttgaagtgcaatgtggatgccgtgttccattattgtaaccatcttatatcttttgcgtgttttgtttagagactctcgtggaaaatttattc 46007290  T
Q  200 ga-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagat 298  Q
    |  ||||||||||||||||    ||||||||||| || | ||||  |||||||| ||||||||||||| || ||| |||  ||||  |||   |||||||    
T  46007291 gggctcaaacgaaatggca----gcgggcaaatacgacaattttttagggggagacagtagccttacttgatgccattcactttgtcgatatgaacagat 46007386  T
Q  299 gggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    |||  ||||| ||||| |||||||||||  ||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||    
T  46007387 ggg--cgggt-gtcttcgagtccgattcaactactctagtgcaaactatatcgtctccgggccatggcgattcggaatttta 46007465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 377
Target Start/End: Complemental strand, 42340573 - 42340301
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||||||||||||||||||||| | |||| |||   | |||||| ||||| |||||| |||       |||||||||||  | |||||||||||    
T  42340573 agacgtggttgaagtgcaatgtggatgttg-gttctatgtcggcaaccatcttacatcttttgcgtgttgtgttagagactctcgtggacaatttattcg 42340475  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||| ||||||||    ||||||| |||||| ||| ||||||||||||||| ||||| ||||||| | | |||  ||||| ||||  ||||||||    
T  42340474 ggctcaaacaaaatggca----gcgggcagatatgacagtgttggagggggaggcaatagccctactcgatgtcattcactttgcagatgtgaacagatg 42340379  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    ||| || |||||||| ||||| || ||  ||||| ||||||||  | | ||||| ||||||||||||||||| |||||    
T  42340378 ggaccgagttgtcttcgagtcagactcagctactttagtgcaagctctgtcgtctccgggccatggtgattcagaatt 42340301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 2615381 - 2615548
Alignment:
Q  99 caagacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttatt 198  Q
    ||||||||||||||| ||||||||||||  || ||| ||||| | |||||||||||||  ||||||| |       |||| || | |  ||||||| |||    
T  2615381 caagacgtggttgaaatgcaatgtggataccgcgtttcatgatcataaccatattacattttttgtgcgttgtgttagaggcttttgtgggcaattcatt 2615480  T
Q  199 cga-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcga 269  Q
    ||  |||||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2615481 cgggctcaaacgaattggca----gcgggcaaatatgatagttttggagggggaggcagtagccttactcga 2615548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 55199525 - 55199677
Alignment:
Q  228 aaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattct 327  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||| |||  ||||  | || |||||||||||| |||||||||||  ||||||| ||     
T  55199525 aaatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgttgttggaaacagatgggaccgggttgtcttcaagtccgactca 55199624  T
Q  328 tctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
     ||||||| ||||||    |||||||  |||| ||||||||||| ||||||||    
T  55199625 gctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaatttta 55199677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 27941202 - 27941129
Alignment:
Q  190 caatttattcg-actcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttact 266  Q
    ||||||||||| |||||||| ||||||||    |||| ||||||||||||||||||||||||||||||||||||||||    
T  27941202 caatttattcggactcaaacaaaatggca----gcggacaaatatgatagttttggagggggaggcagtagccttact 27941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 377
Target Start/End: Complemental strand, 647306 - 647187
Alignment:
Q  258 agccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccg 357  Q
    |||||||||||| | | |||  ||||| ||||  |||||||| || || ||| |||| ||||| || || |||||||||||||||  | ||||||| |||    
T  647306 agccttactcgatgtcattcactttgctgatgtgaacagatgtgaccgagttatcttcgagtctgactcatctactctagtgcaagctctatcgtctccg 647207  T
Q  358 ggccatggtgattctgaatt 377  Q
    |||||||||||||| |||||    
T  647206 ggccatggtgattcggaatt 647187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 647406 - 647310
Alignment:
Q  202 ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatggg 301  Q
    |||||||||||||    ||||||||| ||||||| |||| ||||||||||||||| |||||||||||| | | |||  ||||| ||||  ||||||||||    
T  647406 ctcaaacgaaatg----gcagcgggctaatatgacagttatggagggggaggcagcagccttactcgatgtcattcactttgctgatgtgaacagatggg 647311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 27608999 - 27608924
Alignment:
Q  305 gggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    |||||||||| |||||||| ||  ||||||||||||||    ||||||| ||||||||||||||||| ||||||||    
T  27608999 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaatttta 27608924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 380
Target Start/End: Complemental strand, 34497468 - 34497393
Alignment:
Q  305 gggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatttta 380  Q
    |||||||||| |||||||| ||  ||||||||||||||    ||||||| ||||||||||||||||| ||||||||    
T  34497468 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaatttta 34497393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 342
Target Start/End: Original strand, 48227305 - 48227542
Alignment:
Q  103 acgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc-ga 201  Q
    ||||||||||||| ||||||||||| ||  || ||| | ||||||||| ||||| |||||| |||       |||||||||||| |||||||||||| |     
T  48227305 acgtggttgaagtacaatgtggatgccgcatttcattaccgtaaccatgttacatcttttgcgtgttgtgttagagactctcgcgggcaatttattcggg 48227404  T
Q  202 ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgag-gcccttccttttgcggatgcaaacagatgg 300  Q
    || ||||||||   || |||| ||| ||| ||||  || |||||| |||| ||||||||||||||||||  ||| ||  ||||| ||||  ||  |||      
T  48227405 cttaaacgaaa---ca-gcagtgggaaaacatgactgtattggagtgggatgcagtagccttactcgagaccccatcactttgctgatgtgaatggataa 48227500  T
Q  301 gatcgggttgtctttgagtccgattcttctactctagtgcaa 342  Q
     | || ||||||||||||||||| || |||||||||||||||    
T  48227501 aaccgagttgtctttgagtccgactcatctactctagtgcaa 48227542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 19117774 - 19117720
Alignment:
Q  347 tatcgtccccgggccatggtgattctgaattttaattatgctattatttttagtattat 405  Q
    ||||||| ||||||||||||||||| |||||    |||||||||| |||||||||||||    
T  19117774 tatcgtctccgggccatggtgattcggaatt----ttatgctattgtttttagtattat 19117720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 101 - 371
Target Start/End: Original strand, 14680049 - 14680319
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcag---gcaatttat 197  Q
    |||| |||||||||||||||||||||  || ||||||||| || ||||| |||||| ||||||  ||       |||||||| ||| |   |||||||||    
T  14680049 agacatggttgaagtgcaatgtggataccgcgttccatgaccgcaaccacattacatcttttgcatgttgtgttagagactcccgcggcgggcaatttat 14680148  T
Q  198 tc-gactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacag 296  Q
    |  | |||||| |||||||||    ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||  | ||| |||||||||||    
T  14680149 tatggctcaaatgaaatggca----gcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgcaaacag 14680244  T
Q  297 atgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    |||| | || ||||||||||| ||||| || ||||||||| |||||  | |||| || ||||||  |||||||||    
T  14680245 atggaaccgagttgtctttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattc 14680319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 101 - 377
Target Start/End: Original strand, 28107029 - 28107302
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattc- 199  Q
    ||||||||||||||||||| | ||| | |  ||||||||| ||||||||| ||||| |||| |||||       |||||||| ||  | ||||||||||     
T  28107029 agacgtggttgaagtgcaacgaggaagccacgttccatgatcgtaaccatcttacatctttcgtgtgttgtgttagagactcccgtggacaatttattca 28107128  T
Q  200 gactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
    | ||||||||||||||||    |||| || |||||| |||||||||||||||||||||||||||||| || ||| |||  |||||  ||   || |||||    
T  28107129 ggctcaaacgaaatggca----gcggacagatatgacagttttggagggggaggcagtagccttacttgatgccattcactttgcaaatatgaatagatg 28107224  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||||  |||||||| |||||  | ||  ||||||||||||||  | ||||||| ||||||||||||||||| |||||    
T  28107225 ggatcacgttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaatt 28107302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 101 - 371
Target Start/End: Complemental strand, 15606291 - 15606024
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||| |||||||||||||||||||||| ||  || || || ||||||||||||||| |||||  |||       |||||||| |   ||||| |||||||    
T  15606291 agacatggttgaagtgcaatgtggatgccgcatttcacgatcgtaaccatattacatctttttcgtgttgtgttagagactcccatgggcaacttattcg 15606192  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||| ||||||||    ||||| ||| |||| ||||||||||||||||||||||||||||||||| ||| |||  ||||  ||||  |||| |||    
T  15606191 ggctcaaacaaaatggca----gcgggaaaacatgacagttttggagggggaggcagtagccttactcgatgccattcactttgttgatgggaacaaatg 15606096  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    ||| |||||||||||  ||||||| ||  ||||||||||||||  | ||||||| |  || |||||||||||    
T  15606095 ggaccgggttgtcttcaagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgattc 15606024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 176 - 371
Target Start/End: Complemental strand, 29368276 - 29368086
Alignment:
Q  176 gagactctcgcaggcaatttattcgactcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggccct 275  Q
    ||||||||||  | ||||||||||| |||||| |||||||||    ||||  |||||||| ||||||||||||||||||| || ||||||||||||||||    
T  29368276 gagactctcgtggacaatttattcg-ctcaaaagaaatggca----gcggataaatatgacagttttggagggggaggcaatatccttactcgaggccct 29368182  T
Q  276 tccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattc 371  Q
    ||  ||||| ||||| || |||||||| |    ||| || |||||||| || |||||| ||||||||  | ||||||| ||||| ||| |||||||    
T  29368181 tcactttgctgatgctaatagatgggacctaactgttttcgagtccgactcatctactatagtgcaagctctatcgtctccgggtcatagtgattc 29368086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 377
Target Start/End: Complemental strand, 15053356 - 15053199
Alignment:
Q  220 cagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagt 319  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||| ||| |||   |||| || |  || | ||| ||   ||||||||| ||||    
T  15053356 cagcgggtaaatatgatagtgttggagggggaggcagtagccttactcgatgccattcgccttgctgacgtgaaaaaatgagacaaggttgtcttcgagt 15053257  T
Q  320 ccgattcttctactctagtgcaaagtatatcgtccccgggccatggtgattctgaatt 377  Q
    |||| ||  |||||||||||||||   |||||||  |||||||||||||||| |||||    
T  15053256 ccgactcagctactctagtgcaaacgctatcgtcttcgggccatggtgattcggaatt 15053199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 368
Target Start/End: Complemental strand, 30802173 - 30802024
Alignment:
Q  219 gcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgag 318  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| || ||| ||   ||||| ||||  || | ||||||   ||||||||| |||    
T  30802173 gcagcgggcaaatatgacagttttggtgggggaggcagtagccttactagatgccatttactttgcagatgtgaaaaaatgggactaggttgtcttcgag 30802074  T
Q  319 tccgattcttctactctagtgcaaagtatatcgtccccgggccatggtga 368  Q
    ||||||||  ||||| ||||||||  | ||||||  ||| ||||||||||    
T  30802073 tccgattcagctactttagtgcaagctctatcgtttccgagccatggtga 30802024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 367
Target Start/End: Complemental strand, 11731848 - 11731703
Alignment:
Q  219 gcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgag 318  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||  |||||| | ||||  ||||| ||||  |||| || ||| | ||||||||| |||    
T  11731848 gcagcgggcaaatatgacagttttgga-ggggaggcagcagcct--ctcgagactcttcactttgctgatgagaacatataggaacaggttgtcttcgag 11731752  T
Q  319 tccgattcttctactctagtgcaaagtatatcgtccccgggccatggtg 367  Q
    ||||| ||||  | | ||||||||  | ||| ||| |||||||||||||    
T  11731751 tccgactctttcaatatagtgcaagctctattgtctccgggccatggtg 11731703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 342
Target Start/End: Original strand, 76 - 314
Alignment:
Q  101 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattacaacttttgtgtgnnnnnnnagagactctcgcaggcaatttattcg 200  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| | |||||   | |||| | |||       |||||||| ||  ||||||| |||||    
T  76 agacgtggttgaagtgcaatgtggatgtcgtgtttcatgaccgtcaacatatacnatctttcgcgtgttgttttagagactcccgtgggcaattcattcg 175  T
Q  201 a-ctcaaacgaaatggcatgcagcgggcaaatatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatg 299  Q
      ||||||||||||| ||     || |||||||||| ||||| ||||||||||||||| ||||||||||| ||| |||  ||||| | ||  || | |||    
T  176 ggctcaaacgaaatgacaa----cgagcaaatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatg 271  T
Q  300 ggatcgggttgtctttgagtccgattcttctactctagtgcaa 342  Q
    ||| ||||||||||| |||||||| ||  ||||||||||||||    
T  272 ggaccgggttgtcttcgagtccgactcagctactctagtgcaa 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 342
Target Start/End: Complemental strand, 434 - 323
Alignment:
Q  230 atatgatagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatcgggttgtctttgagtccgattcttc 329  Q
    |||||| ||||||||||||| ||| |||||||||  | |||||||||  |||||| |||||||||| ||||||||   || | || |||||||| || ||    
T  434 atatgacagttttggagggg-aggtagtagccttgttggaggccctttattttgctgatgcaaacaaatgggatccaattattttcgagtccgactcatc 336  T
Q  330 tactctagtgcaa 342  Q
    |||||||||||||    
T  335 tactctagtgcaa 323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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