View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1371_high_36 (Length: 399)

Name: NF1371_high_36
Description: NF1371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1371_high_36
NF1371_high_36
[»] chr7 (3 HSPs)
chr7 (339-390)||(19503924-19503975)
chr7 (45-119)||(5486461-5486534)
chr7 (45-119)||(11728683-11728757)
[»] scaffold0010 (1 HSPs)
scaffold0010 (45-119)||(168893-168967)
[»] chr8 (2 HSPs)
chr8 (45-126)||(17747855-17747936)
chr8 (46-126)||(11434000-11434080)
[»] chr1 (1 HSPs)
chr1 (49-119)||(12085764-12085834)
[»] chr5 (1 HSPs)
chr5 (36-117)||(33700401-33700482)
[»] chr4 (1 HSPs)
chr4 (45-119)||(25229545-25229619)
[»] chr3 (1 HSPs)
chr3 (71-119)||(20590249-20590296)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 390
Target Start/End: Complemental strand, 19503975 - 19503924
Alignment:
Q  339 tcaaaatacaaactcaaattgtctaacacccagaattttgcggaagaataat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19503975 tcaaaatacaaactcaaattgtctaacacccagaattttgcggaagaataat 19503924  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 5486461 - 5486534
Alignment:
Q  45 cttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactc 119  Q
    ||||||||| |||| | || ||||| ||||||||||||| |||| ||||||||||||| || |||||||||||||    
T  5486461 cttgaaagaaatcataatcatcttttaacttgagattca-ttctcaaacattagatagtaaacacaaatacactc 5486534  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 11728757 - 11728683
Alignment:
Q  45 cttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactc 119  Q
    |||||||||||||| |||| |||  |||| ||| ||| |||||| |||||||||||||||||||| | |||||||    
T  11728757 cttgaaagagatcatattcatctcgcaacatgatattaacttctcaaacattagatagaaatcaccattacactc 11728683  T

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Target: scaffold0010 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 168967 - 168893
Alignment:
Q  45 cttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactc 119  Q
    |||||||||||||| |||| |||  |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  168967 cttgaaagagatcatattcatctcacaacttaagattcacttctcaaacattagatagaaatcacaaatacactc 168893  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 17747855 - 17747936
Alignment:
Q  45 cttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactcgagcctc 126  Q
    |||||||| ||||| |||| || |||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  17747855 cttgaaagtgatcatattcatccttcaacttcagattcaattctcaaacattagatagaaattacaaatacactcgagcctc 17747936  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 11434000 - 11434080
Alignment:
Q  46 ttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactcgagcctc 126  Q
    ||||||||||||| |||| |||  || ||  |||||||||||| ||||||||||| ||||| |||||||||| | ||||||    
T  11434000 ttgaaagagatcagattcatctcacacctaaagattcacttctaaaacattagatggaaatgacaaatacacacaagcctc 11434080  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 12085834 - 12085764
Alignment:
Q  49 aaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactc 119  Q
    |||| |||||||||| |||||| ||||||||  ||||||| ||||| ||||||||||||||||| ||||||    
T  12085834 aaagggatcaaattcatctttccacttgagagccacttctcaaacaatagatagaaatcacaaacacactc 12085764  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 33700482 - 33700401
Alignment:
Q  36 tatatattacttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacac 117  Q
    |||| ||| ||||||| | || |||||| ||||  |||||||||||||||||| |||||||||||| |||||||| ||||||    
T  33700482 tataaattgcttgaaaaatattaaattcgtcttcaaacttgagattcacttctcaaacattagatacaaatcacatatacac 33700401  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Original strand, 25229545 - 25229619
Alignment:
Q  45 cttgaaagagatcaaattcttctttcaacttgagattcacttcttaaacattagatagaaatcacaaatacactc 119  Q
    |||||||||||||| || | ||||||||||||||||||| |||| | ||||| ||||  ||||||||||| ||||    
T  25229545 cttgaaagagatcatatacatctttcaacttgagattcaattctcatacattggataccaatcacaaatagactc 25229619  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 20590249 - 20590296
Alignment:
Q  71 aacttgagattcacttcttaaacattagatagaaatcacaaatacactc 119  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||||||||    
T  20590249 aacttgagattca-ttctcaaacattagatagcaatcacaaatacactc 20590296  T

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